Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2055974..2056119 | Replicon | chromosome |
| Accession | NZ_CP087657 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD01635 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2056010..2056112 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2055974..2056119 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH51_RS10120 (LMH51_10120) | 2051104..2053164 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LMH51_RS10125 (LMH51_10125) | 2053168..2053827 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LMH51_RS10130 (LMH51_10130) | 2053906..2054136 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LMH51_RS10135 (LMH51_10135) | 2054249..2054623 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LMH51_RS10140 (LMH51_10140) | 2054627..2055496 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LMH51_RS10145 (LMH51_10145) | 2055513..2055851 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2055974..2056119 | - | 146 | - | - | Antitoxin |
| - | 2056010..2056112 | + | 103 | - | - | Toxin |
| LMH51_RS10150 (LMH51_10150) | 2056487..2056630 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LMH51_RS10155 (LMH51_10155) | 2056735..2057703 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LMH51_RS10160 (LMH51_10160) | 2057860..2058513 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LMH51_RS10165 (LMH51_10165) | 2058510..2058701 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LMH51_RS10170 (LMH51_10170) | 2058799..2059038 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LMH51_RS10175 (LMH51_10175) | 2059154..2060587 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225863 NZ_CP087657:2056010-2056112 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225863 NZ_CP087657:c2056119-2055974 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
