Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2013566..2013711 | Replicon | chromosome |
| Accession | NZ_CP087651 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD01653 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2013602..2013704 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2013566..2013711 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL272_RS09815 (LL272_09815) | 2008696..2010756 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LL272_RS09820 (LL272_09820) | 2010760..2011419 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LL272_RS09825 (LL272_09825) | 2011498..2011728 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LL272_RS09830 (LL272_09830) | 2011841..2012215 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LL272_RS09835 (LL272_09835) | 2012219..2013088 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LL272_RS09840 (LL272_09840) | 2013105..2013443 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2013566..2013711 | - | 146 | - | - | Antitoxin |
| - | 2013602..2013704 | + | 103 | - | - | Toxin |
| LL272_RS09845 (LL272_09845) | 2014079..2014222 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LL272_RS09850 (LL272_09850) | 2014327..2015295 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LL272_RS09855 (LL272_09855) | 2015452..2016105 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LL272_RS09860 (LL272_09860) | 2016102..2016293 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LL272_RS09865 (LL272_09865) | 2016391..2016630 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LL272_RS09870 (LL272_09870) | 2016746..2018179 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225836 NZ_CP087651:2013602-2013704 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225836 NZ_CP087651:c2013711-2013566 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
