Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011891..2012036 | Replicon | chromosome |
| Accession | NZ_CP087639 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD02391 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011927..2012029 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011891..2012036 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH57_RS09860 (LMH57_09860) | 2007021..2009081 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LMH57_RS09865 (LMH57_09865) | 2009085..2009744 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LMH57_RS09870 (LMH57_09870) | 2009823..2010053 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LMH57_RS09875 (LMH57_09875) | 2010166..2010540 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LMH57_RS09880 (LMH57_09880) | 2010544..2011413 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LMH57_RS09885 (LMH57_09885) | 2011430..2011768 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2011891..2012036 | - | 146 | - | - | Antitoxin |
| - | 2011927..2012029 | + | 103 | - | - | Toxin |
| LMH57_RS09890 (LMH57_09890) | 2012404..2012547 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LMH57_RS09895 (LMH57_09895) | 2012652..2013620 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LMH57_RS09900 (LMH57_09900) | 2013777..2014430 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LMH57_RS09905 (LMH57_09905) | 2014427..2014618 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LMH57_RS09910 (LMH57_09910) | 2014716..2014955 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LMH57_RS09915 (LMH57_09915) | 2015071..2016504 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225785 NZ_CP087639:2011927-2012029 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225785 NZ_CP087639:c2012036-2011891 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
