Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1674807..1674898 | Replicon | chromosome |
| Accession | NC_010159 | ||
| Organism | Yersinia pestis Angola | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1674807..1674898 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1674807..1674898 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPANGOLA_RS08885 | 1670342..1671489 | + | 1148 | Protein_1501 | MFS transporter | - |
| YPANGOLA_RS08890 | 1671643..1672377 | - | 735 | WP_002211334.1 | pyruvate formate lyase 1-activating protein | - |
| YPANGOLA_RS08895 | 1673364..1674038 | + | 675 | WP_002211333.1 | glycosyltransferase family 25 protein | - |
| YPANGOLA_RS08900 | 1674205..1674663 | - | 459 | WP_002213759.1 | IS200/IS605-like element IS1541A family transposase | - |
| - | 1674807..1674898 | - | 92 | - | - | Toxin |
| YPANGOLA_RS08910 | 1675068..1675409 | - | 342 | WP_002211095.1 | YebY family protein | - |
| YPANGOLA_RS08915 | 1675506..1676390 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| YPANGOLA_RS08920 | 1676393..1676779 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| YPANGOLA_RS08925 | 1676993..1677223 | + | 231 | WP_042666694.1 | hypothetical protein | - |
| YPANGOLA_RS08930 | 1677256..1677765 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| YPANGOLA_RS08935 | 1678166..1678396 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| YPANGOLA_RS08940 | 1678456..1679406 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1649113..1681376 | 32263 | |
| - | flank | IS/Tn | - | - | 1674205..1674663 | 458 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 bp
>T22578 NC_010159:c1674898-1674807 [Yersinia pestis Angola]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTT
Antitoxin
Download Length: 92 bp
>AT22578 NC_010159:1674807-1674898 [Yersinia pestis Angola]
AAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGTATT
AATGTAGGCTTA
AAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGTATT
AATGTAGGCTTA
