Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2026740..2026885 | Replicon | chromosome |
| Accession | NZ_CP087634 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD02297 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2026776..2026878 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2026740..2026885 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH52_RS09895 (LMH52_09895) | 2021870..2023930 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LMH52_RS09900 (LMH52_09900) | 2023934..2024593 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LMH52_RS09905 (LMH52_09905) | 2024672..2024902 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LMH52_RS09910 (LMH52_09910) | 2025015..2025389 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LMH52_RS09915 (LMH52_09915) | 2025393..2026262 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LMH52_RS09920 (LMH52_09920) | 2026279..2026617 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2026740..2026885 | - | 146 | - | - | Antitoxin |
| - | 2026776..2026878 | + | 103 | - | - | Toxin |
| LMH52_RS09925 (LMH52_09925) | 2027253..2027396 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LMH52_RS09930 (LMH52_09930) | 2027501..2028469 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LMH52_RS09935 (LMH52_09935) | 2028626..2029279 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LMH52_RS09940 (LMH52_09940) | 2029276..2029467 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LMH52_RS09945 (LMH52_09945) | 2029565..2029804 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LMH52_RS09950 (LMH52_09950) | 2029920..2031353 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225762 NZ_CP087634:2026776-2026878 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225762 NZ_CP087634:c2026885-2026740 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
