Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012010..2012155 | Replicon | chromosome |
| Accession | NZ_CP087623 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD02280 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012046..2012148 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012010..2012155 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH50_RS09835 (LMH50_09835) | 2007140..2009200 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LMH50_RS09840 (LMH50_09840) | 2009204..2009863 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LMH50_RS09845 (LMH50_09845) | 2009942..2010172 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LMH50_RS09850 (LMH50_09850) | 2010285..2010659 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LMH50_RS09855 (LMH50_09855) | 2010663..2011532 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LMH50_RS09860 (LMH50_09860) | 2011549..2011887 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2012010..2012155 | - | 146 | - | - | Antitoxin |
| - | 2012046..2012148 | + | 103 | - | - | Toxin |
| LMH50_RS09865 (LMH50_09865) | 2012523..2012666 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LMH50_RS09870 (LMH50_09870) | 2012771..2013739 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LMH50_RS09875 (LMH50_09875) | 2013896..2014549 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LMH50_RS09880 (LMH50_09880) | 2014546..2014737 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LMH50_RS09885 (LMH50_09885) | 2014835..2015074 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LMH50_RS09890 (LMH50_09890) | 2015190..2016623 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225706 NZ_CP087623:2012046-2012148 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225706 NZ_CP087623:c2012155-2012010 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
