Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1938833..1938978 | Replicon | chromosome |
| Accession | NZ_CP087618 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD02162 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1938869..1938971 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1938833..1938978 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH58_RS09255 | 1933963..1936023 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LMH58_RS09260 | 1936027..1936686 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| LMH58_RS09265 | 1936765..1936995 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LMH58_RS09270 | 1937108..1937482 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LMH58_RS09275 | 1937486..1938355 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| LMH58_RS09280 | 1938372..1938710 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1938833..1938978 | - | 146 | - | - | Antitoxin |
| - | 1938869..1938971 | + | 103 | - | - | Toxin |
| LMH58_RS09285 | 1939347..1939490 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LMH58_RS09290 | 1939595..1940563 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LMH58_RS09295 | 1940720..1941373 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LMH58_RS09300 | 1941370..1941561 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LMH58_RS09305 | 1941659..1941898 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LMH58_RS09310 | 1942014..1943447 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225683 NZ_CP087618:1938869-1938971 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225683 NZ_CP087618:c1938978-1938833 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
