Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1974269..1974414 Replicon chromosome
Accession NZ_CP087611
Organism Klebsiella pneumoniae subsp. pneumoniae strain DD02172

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1974305..1974407 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1974269..1974414 (-)

Genomic Context

LMH59_RS09450LMH59_RS09465LMH59_RS09470LMH59_RS09475--LMH59_RS09490LMH59_RS09455LMH59_RS09460--LMH59_RS09480LMH59_RS09485LMH59_RS09495LMH59_RS09500LMH59_RS09505
Location: 1969399..1971459 (2061 bp)
Type: Others
Protein ID: WP_004151449.1
Location: 1972544..1972918 (375 bp)
Type: Others
Protein ID: WP_004151448.1
Location: 1972922..1973791 (870 bp)
Type: Others
Protein ID: WP_004151447.1
Location: 1973808..1974146 (339 bp)
Type: Others
Protein ID: WP_002911404.1
Location: 1974305..1974407 (103 bp)
Type: Toxin
Protein ID: -
Location: 1976156..1976809 (654 bp)
Type: Others
Protein ID: WP_004180432.1
Location: 1971463..1972122 (660 bp)
Type: Others
Protein ID: WP_020324964.1
Location: 1972201..1972431 (231 bp)
Type: Others
Protein ID: WP_002911406.1
Location: 1974269..1974414 (146 bp)
Type: Antitoxin
Protein ID: -
Location: 1974783..1974926 (144 bp)
Type: Others
Protein ID: WP_002911398.1
Location: 1975031..1975999 (969 bp)
Type: Others
Protein ID: WP_004151446.1
Location: 1976806..1976997 (192 bp)
Type: Others
Protein ID: WP_002911395.1
Location: 1977095..1977334 (240 bp)
Type: Others
Protein ID: WP_002911393.1
Location: 1977450..1978883 (1434 bp)
Type: Others
Protein ID: WP_004148845.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
LMH59_RS094501969399..1971459+2061WP_004151449.1oligopeptidase B-
LMH59_RS094551971463..1972122-660WP_020324964.1exodeoxyribonuclease X-
LMH59_RS094601972201..1972431-231WP_002911406.1DNA polymerase III subunit theta-
LMH59_RS094651972544..1972918+375WP_004151448.1CopC domain-containing protein YobA-
LMH59_RS094701972922..1973791+870WP_004151447.1copper homeostasis membrane protein CopD-
LMH59_RS094751973808..1974146+339WP_002911404.1YebY family protein-
-1974269..1974414-146--Antitoxin
-1974305..1974407+103--Toxin
LMH59_RS094801974783..1974926-144WP_002911398.1Ecr family regulatory small membrane protein-
LMH59_RS094851975031..1975999-969WP_004151446.1VirK/YbjX family protein-
LMH59_RS094901976156..1976809+654WP_004180432.1protein-serine/threonine phosphatase-
LMH59_RS094951976806..1976997-192WP_002911395.1YebW family protein-
LMH59_RS095001977095..1977334-240WP_002911393.1YebV family protein-
LMH59_RS095051977450..1978883-1434WP_004148845.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T225655 NZ_CP087611:1974305-1974407 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT225655 NZ_CP087611:c1974414-1974269 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References