Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2049101..2049246 | Replicon | chromosome |
| Accession | NZ_CP087606 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD01304 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2049137..2049239 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2049101..2049246 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH54_RS10010 (LMH54_10010) | 2044231..2046291 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LMH54_RS10015 (LMH54_10015) | 2046295..2046954 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LMH54_RS10020 (LMH54_10020) | 2047033..2047263 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LMH54_RS10025 (LMH54_10025) | 2047376..2047750 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LMH54_RS10030 (LMH54_10030) | 2047754..2048623 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LMH54_RS10035 (LMH54_10035) | 2048640..2048978 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2049101..2049246 | - | 146 | - | - | Antitoxin |
| - | 2049137..2049239 | + | 103 | - | - | Toxin |
| LMH54_RS10040 (LMH54_10040) | 2049614..2049757 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LMH54_RS10045 (LMH54_10045) | 2049862..2050830 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LMH54_RS10050 (LMH54_10050) | 2050987..2051640 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LMH54_RS10055 (LMH54_10055) | 2051637..2051828 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LMH54_RS10060 (LMH54_10060) | 2051926..2052165 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LMH54_RS10065 (LMH54_10065) | 2052281..2053714 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225631 NZ_CP087606:2049137-2049239 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225631 NZ_CP087606:c2049246-2049101 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
