Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1865399..1865546 | Replicon | chromosome |
| Accession | NZ_CP087580 | ||
| Organism | Klebsiella quasipneumoniae strain OSUCMP263AKPC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1865440..1865542 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1865399..1865546 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO541_RS08910 | 1860534..1862594 | + | 2061 | WP_169319492.1 | oligopeptidase B | - |
| LO541_RS08915 | 1862598..1863257 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| LO541_RS08920 | 1863336..1863566 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LO541_RS08925 | 1863679..1864053 | + | 375 | WP_060656066.1 | CopC domain-containing protein YobA | - |
| LO541_RS08930 | 1864057..1864926 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| LO541_RS08935 | 1864943..1865281 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1865399..1865546 | - | 148 | - | - | Antitoxin |
| - | 1865440..1865542 | + | 103 | - | - | Toxin |
| LO541_RS08940 | 1865930..1866073 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| LO541_RS08945 | 1866177..1867145 | - | 969 | WP_117124423.1 | VirK/YbjX family protein | - |
| LO541_RS08950 | 1867302..1867955 | + | 654 | WP_023318613.1 | protein-serine/threonine phosphatase | - |
| LO541_RS08955 | 1867952..1868143 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LO541_RS08960 | 1868241..1868480 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LO541_RS08965 | 1868597..1870030 | - | 1434 | WP_169319491.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225581 NZ_CP087580:1865440-1865542 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT225581 NZ_CP087580:c1865546-1865399 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
