Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 745924..746450 | Replicon | chromosome |
| Accession | NZ_CP087564 | ||
| Organism | Escherichia coli strain CM2010-0578/1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | LOF66_RS03820 | Protein ID | WP_000323025.1 |
| Coordinates | 745924..746211 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | LOF66_RS03825 | Protein ID | WP_000534858.1 |
| Coordinates | 746211..746450 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOF66_RS03760 (741073) | 741073..741570 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LOF66_RS03765 (741567) | 741567..742100 | - | 534 | WP_001092971.1 | lysozyme | - |
| LOF66_RS03770 (742097) | 742097..742408 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| LOF66_RS03775 (742413) | 742413..742628 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LOF66_RS03780 (742848) | 742848..743018 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LOF66_RS03785 (743382) | 743382..743597 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LOF66_RS03790 (743898) | 743898..744110 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LOF66_RS03795 (744165) | 744165..744254 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| LOF66_RS03800 (744532) | 744532..744855 | - | 324 | Protein_750 | antitermination protein | - |
| LOF66_RS03805 (744884) | 744884..745162 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| LOF66_RS03810 (745229) | 745229..745480 | - | 252 | WP_000980994.1 | protein Rem | - |
| LOF66_RS03815 (745697) | 745697..745852 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LOF66_RS03820 (745924) | 745924..746211 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| LOF66_RS03825 (746211) | 746211..746450 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| LOF66_RS03830 (746475) | 746475..746780 | + | 306 | WP_001326990.1 | protein YdfV | - |
| LOF66_RS03835 (746983) | 746983..747315 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LOF66_RS03840 (747752) | 747752..747901 | - | 150 | WP_011443592.1 | protein YdfW | - |
| LOF66_RS03845 (748022) | 748022..749044 | - | 1023 | Protein_759 | ISNCY family transposase | - |
| LOF66_RS03850 (749834) | 749834..750121 | - | 288 | Protein_760 | hypothetical protein | - |
| LOF66_RS03855 (750599) | 750599..751088 | - | 490 | Protein_761 | class I SAM-dependent methyltransferase | - |
| LOF66_RS03860 (751085) | 751085..751336 | - | 252 | Protein_762 | DUF977 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 736037..759916 | 23879 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T225475 WP_000323025.1 NZ_CP087564:c746211-745924 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T225475 NZ_CP121152:115811-116098 [Escherichia coli]
ATGACTTATACGGTAAAATTCAGGGATGATGCGCTCAAGGAATGGCTGAAACTGGATAAGACCATTCAACAACAGTTTGT
GAAAAAACTAAAAAAATGCAGCGAAAATCCTCATATACCGTCAGCAAAACTAAGAGGGCTAAAGGATTGCTACAAAATTA
AACTACGTGCATCGGGATTTCGTCTGGTTTATCAGGTGATTGACGATATGTTAATTATTGCGGTTGTTGCGGTAGGAAAA
CGAGAACGTAGTAACGTTTATAATCTCGCCAGTGAGAGAATGAGATAG
ATGACTTATACGGTAAAATTCAGGGATGATGCGCTCAAGGAATGGCTGAAACTGGATAAGACCATTCAACAACAGTTTGT
GAAAAAACTAAAAAAATGCAGCGAAAATCCTCATATACCGTCAGCAAAACTAAGAGGGCTAAAGGATTGCTACAAAATTA
AACTACGTGCATCGGGATTTCGTCTGGTTTATCAGGTGATTGACGATATGTTAATTATTGCGGTTGTTGCGGTAGGAAAA
CGAGAACGTAGTAACGTTTATAATCTCGCCAGTGAGAGAATGAGATAG
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT225475 WP_000534858.1 NZ_CP087564:c746450-746211 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT225475 NZ_CP121152:115563-115814 [Escherichia coli]
ATGCCTAACATCATTCTGTCTGACACCAGTGCAAGTGTCAGTGAACTGAAAAAAAATCCTATGGCTACAGTCAGTGCCGG
AGATGGTTACCCTGTCGCCATTCTTAACCGGAATCAGCCGGCATTCTACTGTGTGCCTGCTGAACTGTATGAAAGGATGC
TTGATGCTCTGGATGACCAGGAACTGGTGAAACTGGTTACTGAACGCAGCAATCAGCCACTGCATGATGTGGACCTAGAC
AGTTATTTATGA
ATGCCTAACATCATTCTGTCTGACACCAGTGCAAGTGTCAGTGAACTGAAAAAAAATCCTATGGCTACAGTCAGTGCCGG
AGATGGTTACCCTGTCGCCATTCTTAACCGGAATCAGCCGGCATTCTACTGTGTGCCTGCTGAACTGTATGAAAGGATGC
TTGATGCTCTGGATGACCAGGAACTGGTGAAACTGGTTACTGAACGCAGCAATCAGCCACTGCATGATGTGGACCTAGAC
AGTTATTTATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|