Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | sdenTA/AbiEii(toxin) |
| Location | 332956..334396 | Replicon | chromosome |
| Accession | NZ_CP087392 | ||
| Organism | Pectobacterium parvum strain FN20211 | ||
Toxin (Protein)
| Gene name | sdenT | Uniprot ID | - |
| Locus tag | LOZ86_RS01475 | Protein ID | WP_039483127.1 |
| Coordinates | 333509..334396 (+) | Length | 296 a.a. |
Antitoxin (Protein)
| Gene name | sdenA | Uniprot ID | A0A6P1S3G1 |
| Locus tag | LOZ86_RS01470 | Protein ID | WP_039483130.1 |
| Coordinates | 332956..333480 (+) | Length | 175 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOZ86_RS01435 (LOZ86_01435) | 328310..329026 | - | 717 | WP_039513383.1 | PmeII family type II restriction endonuclease | - |
| LOZ86_RS01440 (LOZ86_01440) | 329410..330255 | + | 846 | WP_230242783.1 | nuclease domain-containing protein | - |
| LOZ86_RS01445 (LOZ86_01445) | 330441..331112 | - | 672 | Protein_283 | DNA damage-inducible protein D | - |
| LOZ86_RS01450 (LOZ86_01450) | 331189..332297 | + | 1109 | WP_103164902.1 | IS3-like element ISEca11 family transposase | - |
| LOZ86_RS01455 (LOZ86_01455) | 332314..332469 | - | 156 | Protein_285 | DNA damage-inducible protein D | - |
| LOZ86_RS01460 (LOZ86_01460) | 332665..332751 | + | 87 | Protein_286 | integrase | - |
| LOZ86_RS01465 (LOZ86_01465) | 332760..332846 | - | 87 | Protein_287 | hypothetical protein | - |
| LOZ86_RS01470 (LOZ86_01470) | 332956..333480 | + | 525 | WP_039483130.1 | hypothetical protein | Antitoxin |
| LOZ86_RS01475 (LOZ86_01475) | 333509..334396 | + | 888 | WP_039483127.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
| LOZ86_RS01480 (LOZ86_01480) | 334502..335365 | - | 864 | WP_039483124.1 | YicC/YloC family endoribonuclease | - |
| LOZ86_RS01485 (LOZ86_01485) | 335464..336372 | - | 909 | WP_039483122.1 | LysR family transcriptional regulator | - |
| LOZ86_RS01490 (LOZ86_01490) | 336586..337533 | - | 948 | WP_039483119.1 | isoaspartyl peptidase/L-asparaginase | - |
| LOZ86_RS01495 (LOZ86_01495) | 337590..338411 | - | 822 | WP_039483117.1 | M55 family metallopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 323878..335365 | 11487 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 296 a.a. Molecular weight: 34081.12 Da Isoelectric Point: 5.7136
>T225454 WP_039483127.1 NZ_CP087392:333509-334396 [Pectobacterium parvum]
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIMDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFKPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKEANRPDFPRQKMHIDVCAIPSFDIEKRPLINHYDIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIIWIKQRGIDLSKTLVEKKLTARQKQIEDFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKPIKERTLDNPEYWAYVQGEVHAIASELLNDGIPKNPFDMG
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIMDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFKPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKEANRPDFPRQKMHIDVCAIPSFDIEKRPLINHYDIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIIWIKQRGIDLSKTLVEKKLTARQKQIEDFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKPIKERTLDNPEYWAYVQGEVHAIASELLNDGIPKNPFDMG
Download Length: 888 bp
>T225454 NZ_CP121151:870985-871392 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGTGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGTGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
Antitoxin
Download Length: 175 a.a. Molecular weight: 19369.51 Da Isoelectric Point: 9.0504
>AT225454 WP_039483130.1 NZ_CP087392:332956-333480 [Pectobacterium parvum]
MAKSDELLNALAKAVNAGGGIHSVTELAFMQGVPCDSAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSSVLSYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES
MAKSDELLNALAKAVNAGGGIHSVTELAFMQGVPCDSAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSSVLSYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES
Download Length: 525 bp
>AT225454 NZ_CP121151:870738-871004 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|