Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 264046..264247 | Replicon | chromosome |
| Accession | NZ_CP087390 | ||
| Organism | Enterobacter sp. AN-K1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 264051..264154 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 264046..264247 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOC22_RS01215 (LOC22_01215) | 260307..261755 | + | 1449 | WP_230239280.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LOC22_RS01220 (LOC22_01220) | 261861..262100 | + | 240 | WP_006811010.1 | YebV family protein | - |
| LOC22_RS01225 (LOC22_01225) | 262135..262779 | - | 645 | WP_193135690.1 | protein-serine/threonine phosphatase | - |
| LOC22_RS01230 (LOC22_01230) | 262947..263927 | + | 981 | WP_230239281.1 | VirK/YbjX family protein | - |
| LOC22_RS01235 (LOC22_01235) | 263973..264170 | + | 198 | WP_193135688.1 | hypothetical protein | - |
| - | 264046..264247 | + | 202 | - | - | Antitoxin |
| - | 264051..264154 | - | 104 | - | - | Toxin |
| LOC22_RS01240 (LOC22_01240) | 264296..264634 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LOC22_RS01245 (LOC22_01245) | 264651..265520 | - | 870 | WP_193135687.1 | copper homeostasis membrane protein CopD | - |
| LOC22_RS01250 (LOC22_01250) | 265522..265893 | - | 372 | WP_194302691.1 | CopC domain-containing protein YobA | - |
| LOC22_RS01255 (LOC22_01255) | 266031..266261 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LOC22_RS01260 (LOC22_01260) | 266373..267023 | + | 651 | WP_230239282.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LOC22_RS01265 (LOC22_01265) | 267048..267710 | + | 663 | WP_194302659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T225432 NZ_CP087390:c264154-264051 [Enterobacter sp. AN-K1]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT225432 NZ_CP087390:264046-264247 [Enterobacter sp. AN-K1]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
