Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4879880..4880148 | Replicon | chromosome |
| Accession | NZ_CP087290 | ||
| Organism | Escherichia coli strain APEC 102026 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4880008..4880110 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4879880..4880148 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO741_RS23985 | 4876433..4877095 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LO741_RS23990 | 4877119..4877775 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LO741_RS23995 | 4877877..4878107 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| LO741_RS24000 | 4878246..4878620 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LO741_RS24005 | 4878624..4879496 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| LO741_RS24010 | 4879509..4879850 | + | 342 | WP_000976472.1 | YebY family protein | - |
| LO741_RS24015 | 4880245..4880901 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| LO741_RS24020 | 4880902..4881093 | - | 192 | WP_001317886.1 | YebW family protein | - |
| LO741_RS24025 | 4881198..4881434 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LO741_RS24030 | 4881552..4882991 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| - | 4880008..4880110 | + | 103 | - | - | Toxin |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225279 NZ_CP087290:4880008-4880110 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT225279 NZ_CP087290:c4880148-4879880 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
