Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2895768..2895918 | Replicon | chromosome |
| Accession | NZ_CP087280 | ||
| Organism | Leclercia adecarboxylata strain SH19PE29 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2895780..2895882 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2895768..2895918 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO739_RS13750 (LO739_13750) | 2891772..2893214 | + | 1443 | WP_222128264.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LO739_RS13755 (LO739_13755) | 2893318..2893557 | + | 240 | WP_032611546.1 | YebV family protein | - |
| LO739_RS13760 (LO739_13760) | 2893661..2893852 | + | 192 | WP_032611549.1 | YebW family protein | - |
| LO739_RS13765 (LO739_13765) | 2893853..2894497 | - | 645 | WP_059307643.1 | protein-serine/threonine phosphatase | - |
| LO739_RS13770 (LO739_13770) | 2894676..2895623 | + | 948 | WP_230430766.1 | VirK/YbjX family protein | - |
| - | 2895768..2895918 | + | 151 | - | - | Antitoxin |
| - | 2895780..2895882 | - | 103 | - | - | Toxin |
| LO739_RS13775 (LO739_13775) | 2896024..2896362 | - | 339 | WP_032611900.1 | YebY family protein | - |
| LO739_RS13780 (LO739_13780) | 2896377..2897249 | - | 873 | WP_032611902.1 | copper homeostasis membrane protein CopD | - |
| LO739_RS13785 (LO739_13785) | 2897251..2897625 | - | 375 | WP_059307641.1 | CopC domain-containing protein YobA | - |
| LO739_RS13790 (LO739_13790) | 2897761..2897991 | + | 231 | WP_032611906.1 | DNA polymerase III subunit theta | - |
| LO739_RS13795 (LO739_13795) | 2898099..2898755 | + | 657 | WP_059307640.1 | carbon-nitrogen hydrolase family protein | - |
| LO739_RS13800 (LO739_13800) | 2898780..2899442 | + | 663 | WP_032611910.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225200 NZ_CP087280:c2895882-2895780 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT225200 NZ_CP087280:2895768-2895918 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
