Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2329959..2330041 | Replicon | chromosome |
| Accession | NZ_CP087226 | ||
| Organism | Dickeya fangzhongdai strain B16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2329961..2330041 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2329959..2330041 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR68_RS10210 (QR68_10210) | 2325025..2326149 | - | 1125 | WP_038918970.1 | FIST N-terminal domain-containing protein | - |
| QR68_RS10215 (QR68_10215) | 2326410..2327783 | - | 1374 | WP_049842555.1 | pectate lyase | - |
| QR68_RS10220 (QR68_10220) | 2328160..2328909 | - | 750 | WP_127353491.1 | hypothetical protein | - |
| QR68_RS10225 (QR68_10225) | 2329247..2329654 | + | 408 | WP_038918971.1 | hypothetical protein | - |
| - | 2329959..2330041 | + | 83 | - | - | Antitoxin |
| - | 2329961..2330041 | - | 81 | - | - | Toxin |
| QR68_RS10230 (QR68_10230) | 2330211..2330549 | - | 339 | WP_038918972.1 | YebY family protein | - |
| QR68_RS10235 (QR68_10235) | 2331090..2331506 | + | 417 | WP_231348874.1 | hypothetical protein | - |
| QR68_RS10240 (QR68_10240) | 2331850..2332098 | + | 249 | WP_038918974.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| QR68_RS10245 (QR68_10245) | 2332213..2333955 | - | 1743 | WP_038918975.1 | ABC transporter permease subunit | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2320501..2332098 | 11597 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T225151 NZ_CP087226:c2330041-2329961 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT225151 NZ_CP087226:2329959-2330041 [Dickeya fangzhongdai]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
