Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/upstrm_HI1419-dnstrm_HI1420 |
| Location | 757658..758254 | Replicon | chromosome |
| Accession | NZ_CP087189 | ||
| Organism | Pseudomonas protegens strain B21-024 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | LOY29_RS03320 | Protein ID | WP_258611432.1 |
| Coordinates | 757952..758254 (-) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | LOY29_RS03315 | Protein ID | WP_258611431.1 |
| Coordinates | 757658..757948 (-) | Length | 97 a.a. |
Genomic Context
Location: 761707..763020 (1314 bp)
Type: Others
Protein ID: WP_258611435.1
Type: Others
Protein ID: WP_258611435.1
Location: 753928..756060 (2133 bp)
Type: Others
Protein ID: WP_258611430.1
Type: Others
Protein ID: WP_258611430.1
Location: 756149..756559 (411 bp)
Type: Others
Protein ID: WP_011059017.1
Type: Others
Protein ID: WP_011059017.1
Location: 756615..757109 (495 bp)
Type: Others
Protein ID: WP_011059018.1
Type: Others
Protein ID: WP_011059018.1
Location: 757159..757557 (399 bp)
Type: Others
Protein ID: WP_011059019.1
Type: Others
Protein ID: WP_011059019.1
Location: 757658..757948 (291 bp)
Type: Antitoxin
Protein ID: WP_258611431.1
Type: Antitoxin
Protein ID: WP_258611431.1
Location: 757952..758254 (303 bp)
Type: Toxin
Protein ID: WP_258611432.1
Type: Toxin
Protein ID: WP_258611432.1
Location: 758438..759166 (729 bp)
Type: Others
Protein ID: WP_258611433.1
Type: Others
Protein ID: WP_258611433.1
Location: 759163..760260 (1098 bp)
Type: Others
Protein ID: WP_258611434.1
Type: Others
Protein ID: WP_258611434.1
Location: 760354..761568 (1215 bp)
Type: Others
Protein ID: WP_011059024.1
Type: Others
Protein ID: WP_011059024.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY29_RS03295 (LOY29_03295) | 753928..756060 | - | 2133 | WP_258611430.1 | TonB-dependent copper receptor | - |
| LOY29_RS03300 (LOY29_03300) | 756149..756559 | - | 411 | WP_011059017.1 | DUF2946 domain-containing protein | - |
| LOY29_RS03305 (LOY29_03305) | 756615..757109 | - | 495 | WP_011059018.1 | copper chaperone PCu(A)C | - |
| LOY29_RS03310 (LOY29_03310) | 757159..757557 | - | 399 | WP_011059019.1 | DUF2946 domain-containing protein | - |
| LOY29_RS03315 (LOY29_03315) | 757658..757948 | - | 291 | WP_258611431.1 | putative addiction module antidote protein | Antitoxin |
| LOY29_RS03320 (LOY29_03320) | 757952..758254 | - | 303 | WP_258611432.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LOY29_RS03325 (LOY29_03325) | 758438..759166 | - | 729 | WP_258611433.1 | cobalt-precorrin-6A reductase | - |
| LOY29_RS03330 (LOY29_03330) | 759163..760260 | - | 1098 | WP_258611434.1 | cobalt-precorrin-5B (C(1))-methyltransferase | - |
| LOY29_RS03335 (LOY29_03335) | 760354..761568 | - | 1215 | WP_011059024.1 | bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase | - |
| LOY29_RS03340 (LOY29_03340) | 761707..763020 | + | 1314 | WP_258611435.1 | precorrin-3B synthase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11410.16 Da Isoelectric Point: 10.0056
>T225077 WP_258611432.1 NZ_CP087189:c758254-757952 [Pseudomonas protegens]
MFVFEQTPEFSRWLLNLKDPQGKTRVLARIRAAQLGRFGDCEPVGEGVHEIRIHRGPGYLVYFSHRGKVIYLLLIGGDKA
TQNRDIQRARQLACDLKSEG
MFVFEQTPEFSRWLLNLKDPQGKTRVLARIRAAQLGRFGDCEPVGEGVHEIRIHRGPGYLVYFSHRGKVIYLLLIGGDKA
TQNRDIQRARQLACDLKSEG
Download Length: 303 bp
>T225077 NZ_CP120947:178486-178887 [Burkholderia contaminans]
ATGCCGCGCTACATGCTCGACACCAACATGTGCATCTACCTGATGAAGAATCAGCCGGAGCAGGTTGCGAGACGGTTTGC
GCAGTGCTACACGGGGGACGTCGTGATGTCGGCGATCACGTACGCCGAGCTCGAGTACGGCGTCGCGGCGTGCGCGAGCC
CTGCGCGGGAGCGCGGCAATCTTGCCGCGCTGATCGACGACATTCCCGTTGCGCCGTTCGACGTCGCGGCCGCGCAAGCG
TATGGCCCGGTCCGCGAGGCAACCCGGGAGCGGAAGAAGGATCACCTCGACAAGCTGATCGCCGCGCATGCGGTGTCGCT
CGATGTCGTACTCGTGACCAACAACGAGCGGGATTTCGTGAGCTATCCGGGACTGCGGCTGGAGAACTGGCTGGACGATT
GA
ATGCCGCGCTACATGCTCGACACCAACATGTGCATCTACCTGATGAAGAATCAGCCGGAGCAGGTTGCGAGACGGTTTGC
GCAGTGCTACACGGGGGACGTCGTGATGTCGGCGATCACGTACGCCGAGCTCGAGTACGGCGTCGCGGCGTGCGCGAGCC
CTGCGCGGGAGCGCGGCAATCTTGCCGCGCTGATCGACGACATTCCCGTTGCGCCGTTCGACGTCGCGGCCGCGCAAGCG
TATGGCCCGGTCCGCGAGGCAACCCGGGAGCGGAAGAAGGATCACCTCGACAAGCTGATCGCCGCGCATGCGGTGTCGCT
CGATGTCGTACTCGTGACCAACAACGAGCGGGATTTCGTGAGCTATCCGGGACTGCGGCTGGAGAACTGGCTGGACGATT
GA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10419.95 Da Isoelectric Point: 5.0939
>AT225077 WP_258611431.1 NZ_CP087189:c757948-757658 [Pseudomonas protegens]
MRPPVTRFDAAEYLKTPEDMVAYLDACFEEDTGDGVLIRAALNDIARARGMTQVARDTGLGRESLYKALGSQGNPEFATI
IKVMKALGLKINVSNA
MRPPVTRFDAAEYLKTPEDMVAYLDACFEEDTGDGVLIRAALNDIARARGMTQVARDTGLGRESLYKALGSQGNPEFATI
IKVMKALGLKINVSNA
Download Length: 291 bp
>AT225077 NZ_CP120947:178250-178486 [Burkholderia contaminans]
ATGCATACGACGAGGGTATTTCGGAACGGCAACTCGCAGGCCGTGCGAATTCCTGCCGACCTTGCCTATGAACGCAGCGA
TATCGAACTGGAAATCGAGCGCATTGGTGACGAAATCCGCATTCGGCCGGCGCGGCGGCCGTTGACCCGCGTCCTTGAGA
AATTCGCTAAATTCGGGCCGGATTTCATGGCGGATGGGCGCGGTGACCACGAGCAGGCCGATCGCGAGGGTTTGTGA
ATGCATACGACGAGGGTATTTCGGAACGGCAACTCGCAGGCCGTGCGAATTCCTGCCGACCTTGCCTATGAACGCAGCGA
TATCGAACTGGAAATCGAGCGCATTGGTGACGAAATCCGCATTCGGCCGGCGCGGCGGCCGTTGACCCGCGTCCTTGAGA
AATTCGCTAAATTCGGGCCGGATTTCATGGCGGATGGGCGCGGTGACCACGAGCAGGCCGATCGCGAGGGTTTGTGA