Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3290978..3291431 Replicon chromosome
Accession NZ_CP087187
Organism Pseudomonas atacamensis strain B21-026

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LOY41_RS14655 Protein ID WP_241089656.1
Coordinates 3291210..3291431 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LOY41_RS14650 Protein ID WP_056789559.1
Coordinates 3290978..3291172 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LOY41_RS14625 (LOY41_14590) 3286181..3286978 + 798 WP_110645436.1 ATP-binding cassette domain-containing protein -
LOY41_RS14630 (LOY41_14595) 3286972..3287799 + 828 WP_122704116.1 ABC transporter permease -
LOY41_RS14635 (LOY41_14600) 3287796..3288563 + 768 WP_073476719.1 phosphonate ABC transporter, permease protein PhnE -
LOY41_RS14640 (LOY41_14605) 3288742..3290421 + 1680 WP_122704112.1 MFS transporter -
LOY41_RS14645 (LOY41_14610) 3290529..3290747 + 219 WP_122704110.1 hypothetical protein -
LOY41_RS14650 (LOY41_14615) 3290978..3291172 + 195 WP_056789559.1 hypothetical protein Antitoxin
LOY41_RS14655 (LOY41_14620) 3291210..3291431 + 222 WP_241089656.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-72)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8440.86 Da        Isoelectric Point: 11.2155

>T225067 WP_241089656.1 NZ_CP087187:3291210-3291431 [Pseudomonas atacamensis]
IDYVEQRNTVASVALHQKISAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYRVTEHIKILTVLHARKKYP

Download         Length: 222 bp

>T225067 NZ_CP120944:3663246-3663632 [Escherichia coli O157:H7 str. EDL933]
ATGGGTGTGTATAAGGCAAGGCGATTCAGCCAAAGCACGAAAAAACTTGGTATTCACGATAAAGTTCTCATGGCTGCCGC
TGAAGAAGTGATGCAAGGCATATGGGAGGCTGATTTAGGTAGCGGTGTCATCAAAAAACGGTTACCCCTCCAACAAGGAA
AGAGTGGTGGAGCCAGAACAATTATCTTTTTTAAATCAGCAAATCATGTGTTTTTTTATGATGGTTGGTCCAAGAGTGGT
CTAAGCAGTAAAGGAAGCAAAGAAATCGAAGATGATGAACTGGCAGCCTACAAAAAAATGGCAAATGCATTTCTGGCCTT
TAGCAATAAGCAAATAGAGGATTTGATCGAAACTGGCTTCTTGATTGAGGTGAAAAATGAGCGATAA

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7316.22 Da        Isoelectric Point: 4.2950

>AT225067 WP_056789559.1 NZ_CP087187:3290978-3291172 [Pseudomonas atacamensis]
MSAELSLIVSDFETEEEAADYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp

>AT225067 NZ_CP120944:3663622-3663951 [Escherichia coli O157:H7 str. EDL933]
ATGAGCGATAAATTACAAATGATGCTGGAAGATGCAAAGGAACTGAATGCACTGGGCCTGATGTCTGATAGTGAGGTTGA
TGCCATTGCCGTCATGGTCAAAGCCCGTGAAGTCAGCGCCCGTATAGCCAAAGTCAAATCAATGACGGGTGAAGAGATCA
AAGCCATCCGCACCCGATACGGCATGTCACAATCCGTGCTGGCACATACAATGGGAATGTCAAAAGAAAGTGTCTCGAAA
TGGGAACGTAATGAAATAAAACCGAGCGGCCCGGCACTACGTATTTTGAATACATTGGCAATAAAAGGGCCGGAAGTTTT
TGCAAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References