Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 927195..927714 | Replicon | chromosome |
| Accession | NZ_CP087185 | ||
| Organism | Pseudomonas sichuanensis strain B21-027 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | LOY51_RS04325 | Protein ID | WP_258644810.1 |
| Coordinates | 927195..927485 (-) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | LOY51_RS04330 | Protein ID | WP_125462610.1 |
| Coordinates | 927475..927714 (-) | Length | 80 a.a. |
Genomic Context
Location: 923897..924118 (222 bp)
Type: Others
Protein ID: WP_258644798.1
Type: Others
Protein ID: WP_258644798.1
Location: 924984..926051 (1068 bp)
Type: Others
Protein ID: WP_258644801.1
Type: Others
Protein ID: WP_258644801.1
Location: 926032..926262 (231 bp)
Type: Others
Protein ID: WP_258644804.1
Type: Others
Protein ID: WP_258644804.1
Location: 926302..927075 (774 bp)
Type: Others
Protein ID: WP_258644807.1
Type: Others
Protein ID: WP_258644807.1
Location: 929624..930688 (1065 bp)
Type: Others
Protein ID: Protein_834
Type: Others
Protein ID: Protein_834
Location: 930750..931274 (525 bp)
Type: Others
Protein ID: WP_258644815.1
Type: Others
Protein ID: WP_258644815.1
Location: 924188..924858 (671 bp)
Type: Others
Protein ID: Protein_827
Type: Others
Protein ID: Protein_827
Location: 927195..927485 (291 bp)
Type: Toxin
Protein ID: WP_258644810.1
Type: Toxin
Protein ID: WP_258644810.1
Location: 927475..927714 (240 bp)
Type: Antitoxin
Protein ID: WP_125462610.1
Type: Antitoxin
Protein ID: WP_125462610.1
Location: 927817..929304 (1488 bp)
Type: Others
Protein ID: WP_258644812.1
Type: Others
Protein ID: WP_258644812.1
Location: 931526..932482 (957 bp)
Type: Others
Protein ID: WP_258644818.1
Type: Others
Protein ID: WP_258644818.1
Loading, please wait
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY51_RS04300 (LOY51_04300) | 923897..924118 | + | 222 | WP_258644798.1 | hypothetical protein | - |
| LOY51_RS04305 (LOY51_04305) | 924188..924858 | - | 671 | Protein_827 | hypothetical protein | - |
| LOY51_RS04310 (LOY51_04310) | 924984..926051 | + | 1068 | WP_258644801.1 | XRE family transcriptional regulator | - |
| LOY51_RS04315 (LOY51_04315) | 926032..926262 | + | 231 | WP_258644804.1 | hypothetical protein | - |
| LOY51_RS04320 (LOY51_04320) | 926302..927075 | + | 774 | WP_258644807.1 | carbon-nitrogen hydrolase family protein | - |
| LOY51_RS04325 (LOY51_04325) | 927195..927485 | - | 291 | WP_258644810.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LOY51_RS04330 (LOY51_04330) | 927475..927714 | - | 240 | WP_125462610.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| LOY51_RS04335 (LOY51_04335) | 927817..929304 | - | 1488 | WP_258644812.1 | methylenetetrahydrofolate reductase C-terminal domain-containing protein | - |
| LOY51_RS04340 (LOY51_04340) | 929624..930688 | + | 1065 | Protein_834 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| LOY51_RS04345 (LOY51_04345) | 930750..931274 | + | 525 | WP_258644815.1 | histidine phosphatase family protein | - |
| LOY51_RS04350 (LOY51_04350) | 931526..932482 | - | 957 | WP_258644818.1 | arsenic resistance protein | - |
Associated MGEs
Loading, please wait
MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 921786..923036 | 1250 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11429.22 Da Isoelectric Point: 10.0984
>T225045 WP_258644810.1 NZ_CP087185:c927485-927195 [Pseudomonas sichuanensis]
MTYNLEFDARALKEWQKLGDTLRQQFKKKLATILLNPRVEANRLHGFPDCYKIKLRSSGYRLVYQVIDHEVVVFVVSVDK
RERDQVYRKAAERLSE
MTYNLEFDARALKEWQKLGDTLRQQFKKKLATILLNPRVEANRLHGFPDCYKIKLRSSGYRLVYQVIDHEVVVFVVSVDK
RERDQVYRKAAERLSE
Download Length: 291 bp
>T225045 NZ_CP120865:c4813-4526 [Roseibium sp. KMA01]
ATGACTGGTTATAAACTGTCTCTAGCTGCACAAGCCGACCTTATCAGTATCGCGCTGTATGGCGATGAACGGCATGGGGT
GGAACAGTCTGACCATTACCGTGATCAACTAAGCGCACATTTTGAAATTTTGGCCAAACAGCCCATGTTGTATCCGGCTG
TTGATCATATCCGACAAGGATATCGACGTAGCTTGTGTGGGGTGCATTCCGTCTACTATCGGATCACAGATCGAGGCGTT
GAAATTATGCGGATAATTGGCAGGCAGGATTTCACGAACGAAGTTTGA
ATGACTGGTTATAAACTGTCTCTAGCTGCACAAGCCGACCTTATCAGTATCGCGCTGTATGGCGATGAACGGCATGGGGT
GGAACAGTCTGACCATTACCGTGATCAACTAAGCGCACATTTTGAAATTTTGGCCAAACAGCCCATGTTGTATCCGGCTG
TTGATCATATCCGACAAGGATATCGACGTAGCTTGTGTGGGGTGCATTCCGTCTACTATCGGATCACAGATCGAGGCGTT
GAAATTATGCGGATAATTGGCAGGCAGGATTTCACGAACGAAGTTTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 8992.41 Da Isoelectric Point: 4.8011
>AT225045 WP_125462610.1 NZ_CP087185:c927714-927475 [Pseudomonas sichuanensis]
MASINVRIDDDLKVRAYRELEKLGVTPSELMRQALQYVAERGQLPFKPVLLTEDDEALLATVRERLAAPQRVKVTLDDL
MASINVRIDDDLKVRAYRELEKLGVTPSELMRQALQYVAERGQLPFKPVLLTEDDEALLATVRERLAAPQRVKVTLDDL
Download Length: 240 bp
>AT225045 NZ_CP120865:c5070-4810 [Roseibium sp. KMA01]
ATGTCTATGGTTAAAAAAAGTATTTCGGTCACTGACCAACAGGATGAGTGGATTCGAGCGGAAGTTGCCAAAGGTTATTA
TGGCAATGACAGCGAAGTTATCCGCGCCCTGATCCGTGAACGTCAGTTGCAGCAACAGGAAACGCCTGAGCAAATTGAAG
CCATTCGCGCAAAGCTGATTGAAGCTGAACGCAGTGGATTTGCCGACAAAAGCGTTAAGGAGATTTGGGAAGAAGCGCGC
CAACAAGCGAAGGCTGAATGA
ATGTCTATGGTTAAAAAAAGTATTTCGGTCACTGACCAACAGGATGAGTGGATTCGAGCGGAAGTTGCCAAAGGTTATTA
TGGCAATGACAGCGAAGTTATCCGCGCCCTGATCCGTGAACGTCAGTTGCAGCAACAGGAAACGCCTGAGCAAATTGAAG
CCATTCGCGCAAAGCTGATTGAAGCTGAACGCAGTGGATTTGCCGACAAAAGCGTTAAGGAGATTTGGGAAGAAGCGCGC
CAACAAGCGAAGGCTGAATGA