Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 3350575..3351028 Replicon chromosome
Accession NZ_CP087171
Organism Pseudomonas atacamensis strain B21-045

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LOY27_RS14890 Protein ID WP_240995584.1
Coordinates 3350807..3351028 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LOY27_RS14885 Protein ID WP_110645437.1
Coordinates 3350575..3350769 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LOY27_RS14860 (LOY27_14825) 3345778..3346575 + 798 WP_258710062.1 ATP-binding cassette domain-containing protein -
LOY27_RS14865 (LOY27_14830) 3346569..3347396 + 828 WP_024013147.1 ABC transporter permease -
LOY27_RS14870 (LOY27_14835) 3347393..3348160 + 768 WP_024013148.1 phosphonate ABC transporter, permease protein PhnE -
LOY27_RS14875 (LOY27_14840) 3348339..3350018 + 1680 WP_122698146.1 MFS transporter -
LOY27_RS14880 (LOY27_14845) 3350126..3350344 + 219 WP_024013150.1 hypothetical protein -
LOY27_RS14885 (LOY27_14850) 3350575..3350769 + 195 WP_110645437.1 stability determinant Antitoxin
LOY27_RS14890 (LOY27_14855) 3350807..3351028 + 222 WP_240995584.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-72)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8440.86 Da        Isoelectric Point: 11.2155

>T224992 WP_240995584.1 NZ_CP087171:3350807-3351028 [Pseudomonas atacamensis]
IDYVEQRNTVASVALHQKISAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYRVTDHIKILTLLHARKKYP

Download         Length: 222 bp

>T224992 NZ_CP120711:c3883699-3882953 [Bacillus velezensis]
ATGCTTTTGTTTTTTCAGATTATGGTGTGGACGATGGCGGCCGCACTCATTTTATATGTGTACGCATCCTGGCGGTATGA
GGCAAAGGTAAAAGAAAAAATGTTTGCCATCCGTAAAACGTGGTATTTACTATTTGTACTGGGCTCCATGGTCTATTGGA
CATATGATCCCGAATCACTCTTTGCCGCATGGAGACAATATTTGATTGTTGCCGTCTGCTTTGCCCTTATTGATGCGTTT
ATCTTTTTGAGCGCGTATATCAAAAAGCTCGCCGGCAATGAATTAGAGACGGATACGCGGGAAATTTTAGAAGAAAATAA
CGAAATGCTTCACTCCTATCTTGAAAAACTGAAAACCTATCAATATCTGTTGAAAAATGAACCGATCCATGTATATTATG
GAAGTACAGAAGCTTATGCGGAAGGCATCAGCAGACTGCTGGCCGCTTATGCCGAAAAAATGAATGTCACGGCTTCCTTG
TGCGACTATTCCGCACAATCGGATAAGGACCGCTTGACGGAGCATATGCCTGATGCGGCAGACGTTCAGTCCCGTCTTAA
CCGTAAAGACGTCTACTATGATCAAAAAGGCAGGCTTGTGCTTATTCCGTTTACAGTCCAAAACCGCCATTACGTGATCA
AACTCACGTCGGAAAACCTGTTGACGGAATTCGATTATTTGCTTTTCACATCGCTAACGAGCATTTATGATTTAATGCTG
CCAATAGAAGAGGAAGGTGACGGTTAA

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7330.25 Da        Isoelectric Point: 4.3085

>AT224992 WP_110645437.1 NZ_CP087171:3350575-3350769 [Pseudomonas atacamensis]
MSAELSLIVSDFETEEEAAEYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp

>AT224992 NZ_CP120711:c3882952-3882782 [Bacillus velezensis]
ATGGAGCAGGCATTTCAAAACGGGCAGCCGGAACAAAGAGCGAAACCGTTCAAAATGTTTAAAAAACGTTCAATGACAAG
TATCGCAAGTTACCAGGTCAGCCCTCATACCGCCAGAATTTTCAAAGAAAACGAGCGGCTGATTGACAAGTATAAACAAA
AAAAAGCTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References