Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/PIN(toxin) |
| Location | 1079958..1080604 | Replicon | chromosome |
| Accession | NZ_CP087164 | ||
| Organism | Capillimicrobium parvum strain 0166_1 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | DSM104329_RS05340 | Protein ID | WP_259314359.1 |
| Coordinates | 1080188..1080604 (+) | Length | 139 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | DSM104329_RS05335 | Protein ID | WP_259314358.1 |
| Coordinates | 1079958..1080179 (+) | Length | 74 a.a. |
Genomic Context
Location: 1076234..1076437 (204 bp)
Type: Others
Protein ID: WP_259314353.1
Type: Others
Protein ID: WP_259314353.1
Location: 1077099..1078205 (1107 bp)
Type: Others
Protein ID: WP_259314355.1
Type: Others
Protein ID: WP_259314355.1
Location: 1078220..1079548 (1329 bp)
Type: Others
Protein ID: WP_259314356.1
Type: Others
Protein ID: WP_259314356.1
Location: 1079556..1079924 (369 bp)
Type: Others
Protein ID: WP_259314357.1
Type: Others
Protein ID: WP_259314357.1
Location: 1079958..1080179 (222 bp)
Type: Antitoxin
Protein ID: WP_259314358.1
Type: Antitoxin
Protein ID: WP_259314358.1
Location: 1080188..1080604 (417 bp)
Type: Toxin
Protein ID: WP_259314359.1
Type: Toxin
Protein ID: WP_259314359.1
Location: 1080876..1084352 (3477 bp)
Type: Others
Protein ID: WP_259314360.1
Type: Others
Protein ID: WP_259314360.1
Location: 1075248..1076195 (948 bp)
Type: Others
Protein ID: WP_259314352.1
Type: Others
Protein ID: WP_259314352.1
Location: 1076440..1077030 (591 bp)
Type: Others
Protein ID: WP_259314354.1
Type: Others
Protein ID: WP_259314354.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM104329_RS05305 (DSM104329_01069) | 1075248..1076195 | - | 948 | WP_259314352.1 | Ppx/GppA phosphatase family protein | - |
| DSM104329_RS05310 (DSM104329_01070) | 1076234..1076437 | + | 204 | WP_259314353.1 | hypothetical protein | - |
| DSM104329_RS05315 (DSM104329_01071) | 1076440..1077030 | - | 591 | WP_259314354.1 | TetR family transcriptional regulator | - |
| DSM104329_RS05320 (DSM104329_01072) | 1077099..1078205 | + | 1107 | WP_259314355.1 | multicopper oxidase domain-containing protein | - |
| DSM104329_RS05325 (DSM104329_01073) | 1078220..1079548 | + | 1329 | WP_259314356.1 | right-handed parallel beta-helix repeat-containing protein | - |
| DSM104329_RS05330 (DSM104329_01074) | 1079556..1079924 | + | 369 | WP_259314357.1 | plastocyanin/azurin family copper-binding protein | - |
| DSM104329_RS05335 (DSM104329_01075) | 1079958..1080179 | + | 222 | WP_259314358.1 | antitoxin | Antitoxin |
| DSM104329_RS05340 (DSM104329_01076) | 1080188..1080604 | + | 417 | WP_259314359.1 | PIN domain-containing protein | Toxin |
| DSM104329_RS05350 (DSM104329_01078) | 1080876..1084352 | + | 3477 | WP_259314360.1 | helicase-related protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 139 a.a. Molecular weight: 14709.80 Da Isoelectric Point: 7.1299
>T224949 WP_259314359.1 NZ_CP087164:1080188-1080604 [Capillimicrobium parvum]
VALLDVNALVALAWDSHVHHAAIRRWFATNAAAGWATCPVTESGFVRVSSNRRALPSAIGAEAARGVLAAMRTVEGHRFV
PDDVSVTDPDVPPLHGHRQVTDAHLLVLARRNDLRVVTFDAGLAALAEGRGVELLTVL
VALLDVNALVALAWDSHVHHAAIRRWFATNAAAGWATCPVTESGFVRVSSNRRALPSAIGAEAARGVLAAMRTVEGHRFV
PDDVSVTDPDVPPLHGHRQVTDAHLLVLARRNDLRVVTFDAGLAALAEGRGVELLTVL
Download Length: 417 bp
>T224949 NZ_CP120638:c402494-402213 [Rhizobium sp. 32-5/1]
ATGATCAAGGGCTTTCGCAACAAGGAAACAGAGATCCTTTTCCGGTCGAATGGACGGAGTCGTTTTCCGCCGGATATCGT
CCCGCGTGCTCGACGCAAGCTTCTGGTTCTGGATGCTGCTTTCAAGCTCGCCGATGTGACGGTTCCACCCAGTAACCGGT
TGGAACTGTTAAGCGGTAACCGACAAGGGCAGCATTCGATACGGATAAACGACCAATGGCGTATCTGCTTCGTCTGGGAC
AACGGCCATGCCCATGAGGTTGAAATTTGTGACTACCACTAG
ATGATCAAGGGCTTTCGCAACAAGGAAACAGAGATCCTTTTCCGGTCGAATGGACGGAGTCGTTTTCCGCCGGATATCGT
CCCGCGTGCTCGACGCAAGCTTCTGGTTCTGGATGCTGCTTTCAAGCTCGCCGATGTGACGGTTCCACCCAGTAACCGGT
TGGAACTGTTAAGCGGTAACCGACAAGGGCAGCATTCGATACGGATAAACGACCAATGGCGTATCTGCTTCGTCTGGGAC
AACGGCCATGCCCATGAGGTTGAAATTTGTGACTACCACTAG
Antitoxin
Download Length: 74 a.a. Molecular weight: 7751.86 Da Isoelectric Point: 4.7247
>AT224949 WP_259314358.1 NZ_CP087164:1079958-1080179 [Capillimicrobium parvum]
MRTTLDIDADVVAAARELAAAERRSLGSVISELARRGLSPARVESGGDLPVIRVPLGTAPITPEMVRRALDED
MRTTLDIDADVVAAARELAAAERRSLGSVISELARRGLSPARVESGGDLPVIRVPLGTAPITPEMVRRALDED
Download Length: 222 bp
>AT224949 NZ_CP120638:c402203-401907 [Rhizobium sp. 32-5/1]
ATGCAATTCGTCATGGAAAACCCGATTCATCCCGGCGAAATTCTGAAGGAGGAGTTTCTGAAGGAGTATGCGTTGACGGC
CTATCGGGTCGCTGAAAGCATTGGTGTGCCGCGAACGCGCCTTGAGCGCATCCTGCGCGGTGAAAACGGCATCACTGCTG
ACACAGCATTGCGTCTTGCCCGCTATTTCGGAAACAGTCCCGAATTCTGGCTCAACCTGCAGCGAACCTATGATCTTGCT
CTTGCAGCAAAGAATGCCGGAGATTTGAACGCCATCGTCCCCGTGCAGGCCGCGTGA
ATGCAATTCGTCATGGAAAACCCGATTCATCCCGGCGAAATTCTGAAGGAGGAGTTTCTGAAGGAGTATGCGTTGACGGC
CTATCGGGTCGCTGAAAGCATTGGTGTGCCGCGAACGCGCCTTGAGCGCATCCTGCGCGGTGAAAACGGCATCACTGCTG
ACACAGCATTGCGTCTTGCCCGCTATTTCGGAAACAGTCCCGAATTCTGGCTCAACCTGCAGCGAACCTATGATCTTGCT
CTTGCAGCAAAGAATGCCGGAGATTTGAACGCCATCGTCCCCGTGCAGGCCGCGTGA