Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2010269..2010414 | Replicon | chromosome |
| Accession | NZ_CP087142 | ||
| Organism | Klebsiella pneumoniae strain KP15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2010305..2010407 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2010269..2010414 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOX91_RS09835 (LOX91_09835) | 2005399..2007459 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LOX91_RS09840 (LOX91_09840) | 2007463..2008122 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LOX91_RS09845 (LOX91_09845) | 2008201..2008431 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LOX91_RS09850 (LOX91_09850) | 2008544..2008918 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LOX91_RS09855 (LOX91_09855) | 2008922..2009791 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LOX91_RS09860 (LOX91_09860) | 2009808..2010146 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2010269..2010414 | - | 146 | - | - | Antitoxin |
| - | 2010305..2010407 | + | 103 | - | - | Toxin |
| LOX91_RS09865 (LOX91_09865) | 2010782..2010925 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LOX91_RS09870 (LOX91_09870) | 2011030..2011998 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LOX91_RS09875 (LOX91_09875) | 2012155..2012808 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LOX91_RS09880 (LOX91_09880) | 2012805..2012996 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LOX91_RS09885 (LOX91_09885) | 2013094..2013333 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LOX91_RS09890 (LOX91_09890) | 2013449..2014882 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T224866 NZ_CP087142:2010305-2010407 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT224866 NZ_CP087142:c2010414-2010269 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
