Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1860684..1860829 | Replicon | chromosome |
| Accession | NZ_CP087122 | ||
| Organism | Klebsiella pneumoniae strain TH12852 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1860720..1860822 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1860684..1860829 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOX64_RS09090 | 1855814..1857874 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LOX64_RS09095 | 1857878..1858537 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LOX64_RS09100 | 1858616..1858846 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LOX64_RS09105 | 1858959..1859333 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LOX64_RS09110 | 1859337..1860206 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LOX64_RS09115 | 1860223..1860561 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1860684..1860829 | - | 146 | - | - | Antitoxin |
| - | 1860720..1860822 | + | 103 | - | - | Toxin |
| LOX64_RS09120 | 1861197..1861340 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LOX64_RS09125 | 1861445..1862413 | - | 969 | WP_167875849.1 | VirK/YbjX family protein | - |
| LOX64_RS09130 | 1862570..1863223 | + | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| LOX64_RS09135 | 1863220..1863411 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LOX64_RS09140 | 1863509..1863748 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LOX64_RS09145 | 1863864..1865297 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T224770 NZ_CP087122:1860720-1860822 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT224770 NZ_CP087122:c1860829-1860684 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
