Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | FicTA/Fic(toxin) |
| Location | 2109796..2110723 | Replicon | chromosome |
| Accession | NZ_CP087114 | ||
| Organism | Bartonella machadoae strain 46A | ||
Toxin (Protein)
| Gene name | VbhT | Uniprot ID | - |
| Locus tag | LNM86_RS09915 | Protein ID | WP_241437539.1 |
| Coordinates | 2109796..2110548 (-) | Length | 251 a.a. |
Antitoxin (Protein)
| Gene name | VbhA | Uniprot ID | - |
| Locus tag | LNM86_RS09920 | Protein ID | WP_241437540.1 |
| Coordinates | 2110535..2110723 (-) | Length | 63 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNM86_RS09870 (LNM86_09870) | 2104851..2106059 | + | 1209 | WP_241437535.1 | type IV secretion system protein VirB10 | - |
| LNM86_RS09875 (LNM86_09875) | 2106087..2107139 | + | 1053 | WP_241437536.1 | P-type DNA transfer ATPase VirB11 | - |
| LNM86_RS09880 (LNM86_09880) | 2107192..2107454 | + | 263 | Protein_1934 | CpaF/VirB11 family protein | - |
| LNM86_RS09885 (LNM86_09885) | 2107507..2107770 | + | 264 | Protein_1935 | CpaF/VirB11 family protein | - |
| LNM86_RS09890 (LNM86_09890) | 2107823..2108086 | + | 264 | Protein_1936 | CpaF/VirB11 family protein | - |
| LNM86_RS09895 (LNM86_09895) | 2108139..2108402 | + | 264 | Protein_1937 | CpaF/VirB11 family protein | - |
| LNM86_RS09900 (LNM86_09900) | 2108415..2108489 | - | 75 | WP_241438983.1 | type II toxin-antitoxin system YafQ family toxin | - |
| LNM86_RS09905 (LNM86_09905) | 2108657..2108956 | - | 300 | WP_241437537.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LNM86_RS09910 (LNM86_09910) | 2109033..2109707 | - | 675 | WP_241437538.1 | BID domain-containing protein | - |
| LNM86_RS09915 (LNM86_09915) | 2109796..2110548 | - | 753 | WP_241437539.1 | Fic family protein | Toxin |
| LNM86_RS09920 (LNM86_09920) | 2110535..2110723 | - | 189 | WP_241437540.1 | antitoxin VbhA family protein | Antitoxin |
| LNM86_RS09925 (LNM86_09925) | 2110736..2111050 | - | 315 | WP_241437541.1 | helix-turn-helix domain-containing protein | - |
| LNM86_RS09930 (LNM86_09930) | 2111254..2114952 | - | 3699 | WP_241437542.1 | Ti-type conjugative transfer relaxase TraA | - |
| LNM86_RS09935 (LNM86_09935) | 2115160..2115390 | + | 231 | WP_241437543.1 | TraC family protein | - |
| LNM86_RS09940 (LNM86_09940) | 2115443..2115649 | + | 207 | WP_241437544.1 | conjugal transfer protein TraD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | virB4 / virB11 / virB11 / virB11 / virB11 / virB11 | 2004136..2135988 | 131852 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 251 a.a. Molecular weight: 28543.25 Da Isoelectric Point: 9.1560
>T224764 WP_241437539.1 NZ_CP087114:c2110548-2109796 [Bartonella machadoae]
VVKYENKNDPYTDPETGVMYNRLGIKDQATLRSVESSFAYIRSYELDSTPIKGKFDLNHMKEIHKKLFGDVYEWAGEIRS
IDISKGGSLFAYHHKIESYAPKITQQLAKEQYLGGLDADEFSQRAGYYMGEINALHPFREGNGRTQREFIGQLAREAGYN
IHWEGVKREEMTKASIEALYGSSELLSGLIRKSLTEFTKNKNVDVSKGLGEKISSYIETNKELSQKQKEKIETLLDKVKP
NVGNLQKKRT
VVKYENKNDPYTDPETGVMYNRLGIKDQATLRSVESSFAYIRSYELDSTPIKGKFDLNHMKEIHKKLFGDVYEWAGEIRS
IDISKGGSLFAYHHKIESYAPKITQQLAKEQYLGGLDADEFSQRAGYYMGEINALHPFREGNGRTQREFIGQLAREAGYN
IHWEGVKREEMTKASIEALYGSSELLSGLIRKSLTEFTKNKNVDVSKGLGEKISSYIETNKELSQKQKEKIETLLDKVKP
NVGNLQKKRT
Download Length: 753 bp
>T224764 NZ_CP120511:522521-522871 [Bacillus sp. B28]
TTGATTGTGAAACGCGGCGATGTTTATTTTGCTGATTTATCTCCTGTTGTTGGCTCAGAGCAAGGCGGGGTGCGCCCGGT
TTTAGTGATCCAAAATGACATCGGAAATCGCTTCAGCCCAACTGCTATTGTTGCAGCCATAACAGCCCAAATACAGAAAG
CGAAATTACCAACCCACGTCGAAATTGATGCAAAACGCTACGGTTTTGAAAGAGATTCCGTTATTTTGCTGGAGCAAATT
CGGACGATTGACAAGCAAAGGTTAACGGATAAGATTACTCATCTGGATGATGAAATGATGGATAAGGTTGATGAAGCCTT
ACAGATCAGTTTGGCACTCATTGATTTTTAG
TTGATTGTGAAACGCGGCGATGTTTATTTTGCTGATTTATCTCCTGTTGTTGGCTCAGAGCAAGGCGGGGTGCGCCCGGT
TTTAGTGATCCAAAATGACATCGGAAATCGCTTCAGCCCAACTGCTATTGTTGCAGCCATAACAGCCCAAATACAGAAAG
CGAAATTACCAACCCACGTCGAAATTGATGCAAAACGCTACGGTTTTGAAAGAGATTCCGTTATTTTGCTGGAGCAAATT
CGGACGATTGACAAGCAAAGGTTAACGGATAAGATTACTCATCTGGATGATGAAATGATGGATAAGGTTGATGAAGCCTT
ACAGATCAGTTTGGCACTCATTGATTTTTAG
Antitoxin
Download Length: 63 a.a. Molecular weight: 7108.18 Da Isoelectric Point: 4.5983
>AT224764 WP_241437540.1 NZ_CP087114:c2110723-2110535 [Bartonella machadoae]
MLSEEEIKQRRFAAKNALANQRLEGLEPDPQVVAQMERVIIGELETSDVIKDLMERVKRGEV
MLSEEEIKQRRFAAKNALANQRLEGLEPDPQVVAQMERVIIGELETSDVIKDLMERVKRGEV
Download Length: 189 bp
>AT224764 NZ_CP120511:522235-522516 [Bacillus sp. B28]
TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCCGAAAACCTAGTAGCTGAATTGGATGGTGTAGCGAT
GCGGGAGAAACGAAGCAGAAACGAACTGATATCACAAGCAGTGAGAGCCTATGTCAGCGAACGAACAACTCGTCACAACC
GTGATTTGATGAGACGCGGCTATATGGAAATGGCGAAAATCAACCTGAACATTTCTTCCGAGGCTCACTTTGCGGAGTGC
GAGGCTGAAACGACAGTTGAGCGCTTAGTCAGCGGAGGATAA
TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCCGAAAACCTAGTAGCTGAATTGGATGGTGTAGCGAT
GCGGGAGAAACGAAGCAGAAACGAACTGATATCACAAGCAGTGAGAGCCTATGTCAGCGAACGAACAACTCGTCACAACC
GTGATTTGATGAGACGCGGCTATATGGAAATGGCGAAAATCAACCTGAACATTTCTTCCGAGGCTCACTTTGCGGAGTGC
GAGGCTGAAACGACAGTTGAGCGCTTAGTCAGCGGAGGATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|