Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1820510..1820781 | Replicon | chromosome |
| Accession | NZ_CP087110 | ||
| Organism | Escherichia coli strain PJ-T13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1820640..1820743 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1820510..1820781 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LM520_RS08770 | 1817065..1817727 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LM520_RS08775 | 1817751..1818407 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LM520_RS08780 | 1818509..1818739 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LM520_RS08785 | 1818878..1819252 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LM520_RS08790 | 1819256..1820128 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LM520_RS08795 | 1820141..1820482 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1820510..1820781 | - | 272 | - | - | Antitoxin |
| - | 1820640..1820743 | + | 104 | - | - | Toxin |
| LM520_RS08800 | 1820878..1821534 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LM520_RS08805 | 1821535..1821726 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LM520_RS08810 | 1821831..1822067 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LM520_RS08815 | 1822185..1823624 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224732 NZ_CP087110:1820640-1820743 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224732 NZ_CP087110:c1820781-1820510 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
