Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/- |
| Location | 3423163..3423743 | Replicon | chromosome |
| Accession | NZ_CP086862 | ||
| Organism | Pseudosulfitobacter pseudonitzschiae strain SC33-17 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | LOE29_RS17030 | Protein ID | WP_224556587.1 |
| Coordinates | 3423163..3423417 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | - |
| Locus tag | LOE29_RS17035 | Protein ID | WP_224556600.1 |
| Coordinates | 3423414..3423743 (+) | Length | 110 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE29_RS16995 (LOE29_16990) | 3420186..3420509 | + | 324 | WP_224556571.1 | hypothetical protein | - |
| LOE29_RS17000 (LOE29_16995) | 3420587..3421102 | - | 516 | WP_224556573.1 | hypothetical protein | - |
| LOE29_RS17005 (LOE29_17000) | 3421080..3421907 | - | 828 | WP_224556575.1 | ParB N-terminal domain-containing protein | - |
| LOE29_RS17010 (LOE29_17005) | 3421904..3422065 | - | 162 | WP_224556578.1 | hypothetical protein | - |
| LOE29_RS17015 (LOE29_17010) | 3422065..3422517 | - | 453 | WP_224556581.1 | hypothetical protein | - |
| LOE29_RS17020 (LOE29_17015) | 3422593..3422763 | - | 171 | WP_224556583.1 | hypothetical protein | - |
| LOE29_RS17025 (LOE29_17020) | 3422863..3423051 | + | 189 | WP_224556585.1 | ribbon-helix-helix domain-containing protein | - |
| LOE29_RS17030 (LOE29_17025) | 3423163..3423417 | + | 255 | WP_224556587.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| LOE29_RS17035 (LOE29_17030) | 3423414..3423743 | + | 330 | WP_224556600.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| LOE29_RS17040 (LOE29_17035) | 3423804..3424067 | + | 264 | WP_224556602.1 | hypothetical protein | - |
| LOE29_RS24705 | 3424054..3424176 | - | 123 | WP_263481010.1 | hypothetical protein | - |
| LOE29_RS17045 (LOE29_17040) | 3424169..3424459 | - | 291 | WP_224556604.1 | hypothetical protein | - |
| LOE29_RS17050 (LOE29_17045) | 3424522..3425046 | - | 525 | WP_224556606.1 | hypothetical protein | - |
| LOE29_RS17055 (LOE29_17050) | 3425266..3425505 | - | 240 | WP_229991957.1 | phage head morphogenesis protein | - |
| LOE29_RS17060 (LOE29_17055) | 3425502..3425876 | - | 375 | WP_229991958.1 | hypothetical protein | - |
| LOE29_RS17065 (LOE29_17060) | 3425964..3426395 | - | 432 | WP_224556641.1 | hypothetical protein | - |
| LOE29_RS17070 (LOE29_17065) | 3426399..3427067 | - | 669 | WP_224556642.1 | hypothetical protein | - |
| LOE29_RS17075 (LOE29_17070) | 3427064..3427270 | - | 207 | WP_229940501.1 | hypothetical protein | - |
| LOE29_RS17080 (LOE29_17075) | 3427351..3427986 | + | 636 | WP_224556647.1 | S24 family peptidase | - |
| LOE29_RS17085 (LOE29_17080) | 3428245..3428607 | + | 363 | WP_224556648.1 | type II toxin-antitoxin system HicB family antitoxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 3405471..3437789 | 32318 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9336.69 Da Isoelectric Point: 10.8025
>T224529 WP_224556587.1 NZ_CP086862:3423163-3423417 [Pseudosulfitobacter pseudonitzschiae]
MNSKQRKTLKAIFTDPVSGTIEWVRIESLLVAAGAETIEGNGSRVRFVKDGVVGSFHRPHPDKEAKRYQVRDARAFLTQI
GVTP
MNSKQRKTLKAIFTDPVSGTIEWVRIESLLVAAGAETIEGNGSRVRFVKDGVVGSFHRPHPDKEAKRYQVRDARAFLTQI
GVTP
Download Length: 255 bp
>T224529 NZ_CP120341:c4083179-4082895 [Salmonella enterica subsp. enterica serovar Muenchen]
ATGACTTATGAACTGGAATTCGACCCGAGGGCCTTAAAAGAGTGGCATAAGCTGGGCGATACGGTGAAGGCTCAGCTTAA
GAAAAAGTTGGCTGATGTGCTATTGAACCCCAGAATCGACTCTGCCCGTTTAAACGGTCTTCCTGACTGCTATAAAATTA
AGCTTAAATCGTCCGGTTATCGTCTGGTGTACCAGGTTCGGGATGACGTTGTGATTGTGTTTGTTGTCGCGGTCGGTAAG
CGAGAACATTCAGCCGTCTATCACGATGCAAACAAACGGCTTTAG
ATGACTTATGAACTGGAATTCGACCCGAGGGCCTTAAAAGAGTGGCATAAGCTGGGCGATACGGTGAAGGCTCAGCTTAA
GAAAAAGTTGGCTGATGTGCTATTGAACCCCAGAATCGACTCTGCCCGTTTAAACGGTCTTCCTGACTGCTATAAAATTA
AGCTTAAATCGTCCGGTTATCGTCTGGTGTACCAGGTTCGGGATGACGTTGTGATTGTGTTTGTTGTCGCGGTCGGTAAG
CGAGAACATTCAGCCGTCTATCACGATGCAAACAAACGGCTTTAG
Antitoxin
Download Length: 110 a.a. Molecular weight: 12090.66 Da Isoelectric Point: 6.0876
>AT224529 WP_224556600.1 NZ_CP086862:3423414-3423743 [Pseudosulfitobacter pseudonitzschiae]
MSTMTFKGYQARVEFDPEDEIFFGRIAGINDVVGFHGESVAELKSAFHEAVDDYLETCKAAGKKPQKPYSGKVMFRVAPE
THRRIAVAAELSGKSLNQWAEEKLEAAAH
MSTMTFKGYQARVEFDPEDEIFFGRIAGINDVVGFHGESVAELKSAFHEAVDDYLETCKAAGKKPQKPYSGKVMFRVAPE
THRRIAVAAELSGKSLNQWAEEKLEAAAH
Download Length: 330 bp
>AT224529 NZ_CP120341:c4083411-4083169 [Salmonella enterica subsp. enterica serovar Muenchen]
ATGGCCACGCTGAACGTCCGTCTGGATGACAAACTCAAAAATGAGGCTTATGCCGTGCTGGAAAAACTGAACATTACTCC
AACGGAAGCCGTGCGATTACTGTTCCAGTACGTCGCGGAAACGGGGCGCATGCCAGTGAAAACCGTCACTCTTAGCGACA
GTGAAGATGCATTGATTCAGACAGTTCGGGAGAGGCTGTCTAGTCCGCAAAAGGGAATCAAGGTTAGTCTGGATGACTTA
TGA
ATGGCCACGCTGAACGTCCGTCTGGATGACAAACTCAAAAATGAGGCTTATGCCGTGCTGGAAAAACTGAACATTACTCC
AACGGAAGCCGTGCGATTACTGTTCCAGTACGTCGCGGAAACGGGGCGCATGCCAGTGAAAACCGTCACTCTTAGCGACA
GTGAAGATGCATTGATTCAGACAGTTCGGGAGAGGCTGTCTAGTCCGCAAAAGGGAATCAAGGTTAGTCTGGATGACTTA
TGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|