Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2050663..2050934 | Replicon | chromosome |
| Accession | NC_009801 | ||
| Organism | Escherichia coli E24377A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2050701..2050804 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2050663..2050934 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECE24377A_RS11870 | 2047820..2049259 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECE24377A_RS11875 | 2049377..2049613 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECE24377A_RS11880 | 2049718..2049909 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECE24377A_RS11885 | 2049910..2050566 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2050663..2050934 | + | 272 | - | - | Antitoxin |
| - | 2050701..2050804 | - | 104 | - | - | Toxin |
| ECE24377A_RS11895 | 2050962..2051303 | - | 342 | WP_000976492.1 | YebY family protein | - |
| ECE24377A_RS11900 | 2051316..2052188 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| ECE24377A_RS11905 | 2052192..2052566 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ECE24377A_RS11910 | 2052705..2052935 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECE24377A_RS11915 | 2053037..2053693 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECE24377A_RS11920 | 2053717..2054379 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T22450 NC_009801:c2050804-2050701 [Escherichia coli O139:H28 str. E24377A]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT22450 NC_009801:2050663-2050934 [Escherichia coli O139:H28 str. E24377A]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
