Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1853100..1853245 | Replicon | chromosome |
| Accession | NZ_CP086761 | ||
| Organism | Klebsiella pneumoniae strain AZS099 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1853136..1853238 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1853100..1853245 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LON84_RS08975 | 1848230..1850290 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LON84_RS08980 | 1850294..1850953 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LON84_RS08985 | 1851032..1851262 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LON84_RS08990 | 1851375..1851749 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LON84_RS08995 | 1851753..1852622 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| LON84_RS09000 | 1852639..1852977 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1853100..1853245 | - | 146 | - | - | Antitoxin |
| - | 1853136..1853238 | + | 103 | - | - | Toxin |
| LON84_RS09005 | 1853614..1853757 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LON84_RS09010 | 1853862..1854830 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LON84_RS09015 | 1854987..1855640 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| LON84_RS09020 | 1855637..1855828 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LON84_RS09025 | 1855926..1856165 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LON84_RS09030 | 1856281..1857714 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T224432 NZ_CP086761:1853136-1853238 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT224432 NZ_CP086761:c1853245-1853100 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
