Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1973437..1973582 | Replicon | chromosome |
| Accession | NZ_CP086724 | ||
| Organism | Klebsiella pneumoniae strain KP_3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1973473..1973575 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1973437..1973582 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOQ45_RS09480 | 1968567..1970627 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LOQ45_RS09485 | 1970631..1971290 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LOQ45_RS09490 | 1971369..1971599 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LOQ45_RS09495 | 1971712..1972086 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LOQ45_RS09500 | 1972090..1972959 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LOQ45_RS09505 | 1972976..1973314 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1973437..1973582 | - | 146 | - | - | Antitoxin |
| - | 1973473..1973575 | + | 103 | - | - | Toxin |
| LOQ45_RS09510 | 1973950..1974093 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LOQ45_RS09515 | 1974198..1975166 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LOQ45_RS09520 | 1975323..1975976 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| LOQ45_RS09525 | 1975973..1976164 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LOQ45_RS09530 | 1976262..1976501 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LOQ45_RS09535 | 1976617..1978050 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T224376 NZ_CP086724:1973473-1973575 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT224376 NZ_CP086724:c1973582-1973437 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
