Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4180019..4180290 | Replicon | chromosome |
| Accession | NZ_CP086678 | ||
| Organism | Escherichia coli strain EFF60 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4180149..4180252 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4180019..4180290 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMF34_RS19935 | 4176574..4177236 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LMF34_RS19940 | 4177260..4177916 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LMF34_RS19945 | 4178018..4178248 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LMF34_RS19950 | 4178387..4178761 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| LMF34_RS19955 | 4178765..4179637 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| LMF34_RS19960 | 4179650..4179991 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 4180019..4180290 | - | 272 | - | - | Antitoxin |
| - | 4180149..4180252 | + | 104 | - | - | Toxin |
| LMF34_RS19965 | 4180387..4181043 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| LMF34_RS19970 | 4181044..4181235 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LMF34_RS19975 | 4181340..4181576 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LMF34_RS19980 | 4181694..4183133 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224356 NZ_CP086678:4180149-4180252 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224356 NZ_CP086678:c4180290-4180019 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
