Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 951498..951769 | Replicon | chromosome |
| Accession | NZ_CP086662 | ||
| Organism | Escherichia coli strain E2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 951536..951639 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 951498..951769 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE88_RS04610 | 948655..950094 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LOE88_RS04615 | 950212..950448 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LOE88_RS04620 | 950553..950744 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LOE88_RS04625 | 950745..951401 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 951498..951769 | + | 272 | - | - | Antitoxin |
| - | 951536..951639 | - | 104 | - | - | Toxin |
| LOE88_RS04630 | 951797..952138 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LOE88_RS04635 | 952151..953023 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LOE88_RS04640 | 953027..953401 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| LOE88_RS04645 | 953540..953770 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LOE88_RS04650 | 953872..954528 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LOE88_RS04655 | 954552..955214 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224296 NZ_CP086662:c951639-951536 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224296 NZ_CP086662:951498-951769 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
