Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2374319..2374590 | Replicon | chromosome |
| Accession | NZ_CP086627 | ||
| Organism | Escherichia coli strain RIVM_C036569 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2374449..2374552 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2374319..2374590 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN356_RS11550 | 2370874..2371536 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN356_RS11555 | 2371560..2372216 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN356_RS11560 | 2372318..2372548 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN356_RS11565 | 2372687..2373061 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN356_RS11570 | 2373065..2373937 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN356_RS11575 | 2373950..2374291 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2374319..2374590 | - | 272 | - | - | Antitoxin |
| - | 2374449..2374552 | + | 104 | - | - | Toxin |
| LN356_RS11580 | 2374687..2375343 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN356_RS11585 | 2375344..2375535 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN356_RS11590 | 2375640..2375876 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN356_RS11595 | 2375994..2377433 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2367009..2375876 | 8867 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224259 NZ_CP086627:2374449-2374552 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224259 NZ_CP086627:c2374590-2374319 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
