Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2417709..2417980 | Replicon | chromosome |
| Accession | NZ_CP086626 | ||
| Organism | Escherichia coli strain RIVM_C037134 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2417839..2417942 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2417709..2417980 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN362_RS11895 | 2414264..2414926 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN362_RS11900 | 2414950..2415606 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN362_RS11905 | 2415708..2415938 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN362_RS11910 | 2416077..2416451 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN362_RS11915 | 2416455..2417327 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN362_RS11920 | 2417340..2417681 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2417709..2417980 | - | 272 | - | - | Antitoxin |
| - | 2417839..2417942 | + | 104 | - | - | Toxin |
| LN362_RS11925 | 2418077..2418733 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN362_RS11930 | 2418734..2418925 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN362_RS11935 | 2419030..2419266 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN362_RS11940 | 2419384..2420823 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224232 NZ_CP086626:2417839-2417942 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224232 NZ_CP086626:c2417980-2417709 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
