Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1942043..1942314 | Replicon | chromosome |
| Accession | NC_009800 | ||
| Organism | Escherichia coli HS | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1942081..1942184 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1942043..1942314 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECHS_RS09550 (EcHS_A1926) | 1939200..1940639 | + | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECHS_RS09555 (EcHS_A1927) | 1940757..1940993 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| ECHS_RS09560 (EcHS_A1928) | 1941098..1941289 | + | 192 | WP_024186698.1 | YebW family protein | - |
| ECHS_RS09565 (EcHS_A1929) | 1941290..1941946 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 1942043..1942314 | + | 272 | - | - | Antitoxin |
| - | 1942081..1942184 | - | 104 | - | - | Toxin |
| ECHS_RS09575 (EcHS_A1930) | 1942342..1942683 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECHS_RS09580 (EcHS_A1931) | 1942696..1943568 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| ECHS_RS09585 (EcHS_A1932) | 1943572..1943946 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| ECHS_RS09590 (EcHS_A1933) | 1944085..1944315 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECHS_RS09595 (EcHS_A1934) | 1944417..1945073 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| ECHS_RS09600 (EcHS_A1935) | 1945097..1945759 | + | 663 | WP_000944255.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T22422 NC_009800:c1942184-1942081 [Escherichia coli HS]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT22422 NC_009800:1942043-1942314 [Escherichia coli HS]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
