Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2383689..2383960 | Replicon | chromosome |
| Accession | NZ_CP086624 | ||
| Organism | Escherichia coli strain RIVM_C037791 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2383819..2383922 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2383689..2383960 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN354_RS11675 | 2380244..2380906 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN354_RS11680 | 2380930..2381586 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN354_RS11685 | 2381688..2381918 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN354_RS11690 | 2382057..2382431 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN354_RS11695 | 2382435..2383307 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN354_RS11700 | 2383320..2383661 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2383689..2383960 | - | 272 | - | - | Antitoxin |
| - | 2383819..2383922 | + | 104 | - | - | Toxin |
| LN354_RS11705 | 2384057..2384713 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN354_RS11710 | 2384714..2384905 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN354_RS11715 | 2385010..2385246 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN354_RS11720 | 2385364..2386803 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2311119..2399800 | 88681 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224178 NZ_CP086624:2383819-2383922 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224178 NZ_CP086624:c2383960-2383689 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
