Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2417678..2417949 | Replicon | chromosome |
| Accession | NZ_CP086622 | ||
| Organism | Escherichia coli strain RIVM_C037884 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2417808..2417911 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2417678..2417949 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN352_RS11890 | 2414233..2414895 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN352_RS11895 | 2414919..2415575 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN352_RS11900 | 2415677..2415907 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN352_RS11905 | 2416046..2416420 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN352_RS11910 | 2416424..2417296 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN352_RS11915 | 2417309..2417650 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2417678..2417949 | - | 272 | - | - | Antitoxin |
| - | 2417808..2417911 | + | 104 | - | - | Toxin |
| LN352_RS11920 | 2418046..2418702 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN352_RS11925 | 2418703..2418894 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN352_RS11930 | 2418999..2419235 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN352_RS11935 | 2419353..2420792 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224124 NZ_CP086622:2417808-2417911 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224124 NZ_CP086622:c2417949-2417678 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
