Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2346553..2346824 | Replicon | chromosome |
| Accession | NZ_CP086618 | ||
| Organism | Escherichia coli strain RIVM_C039227 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2346683..2346786 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2346553..2346824 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN355_RS11395 | 2343108..2343770 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN355_RS11400 | 2343794..2344450 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN355_RS11405 | 2344552..2344782 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN355_RS11410 | 2344921..2345295 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN355_RS11415 | 2345299..2346171 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN355_RS11420 | 2346184..2346525 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2346553..2346824 | - | 272 | - | - | Antitoxin |
| - | 2346683..2346786 | + | 104 | - | - | Toxin |
| LN355_RS11425 | 2346921..2347577 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN355_RS11430 | 2347578..2347769 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN355_RS11435 | 2347874..2348110 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN355_RS11440 | 2348228..2349667 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224061 NZ_CP086618:2346683-2346786 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224061 NZ_CP086618:c2346824-2346553 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
