Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1098910..1099055 | Replicon | chromosome |
| Accession | NC_009792 | ||
| Organism | Citrobacter koseri ATCC BAA-895 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1098945..1099048 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1098910..1099055 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKO_RS04860 | 1095366..1096028 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| CKO_RS04865 | 1096052..1096708 | - | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| CKO_RS04870 | 1096814..1097044 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| CKO_RS04875 | 1097185..1097559 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| CKO_RS04880 | 1097559..1098434 | + | 876 | WP_080516649.1 | copper homeostasis membrane protein CopD | - |
| CKO_RS04885 | 1098451..1098789 | + | 339 | WP_012132024.1 | YebY family protein | - |
| - | 1098910..1099055 | - | 146 | - | - | Antitoxin |
| - | 1098945..1099048 | + | 104 | - | - | Toxin |
| CKO_RS04890 | 1099456..1099647 | - | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| CKO_RS04895 | 1100017..1102104 | - | 2088 | WP_024130260.1 | TonB-dependent receptor | - |
| CKO_RS04900 | 1102352..1103014 | + | 663 | WP_024130261.1 | protein-serine/threonine phosphatase | - |
| CKO_RS04905 | 1103015..1103206 | - | 192 | WP_012132031.1 | YebW family protein | - |
| CKO_RS04910 | 1103309..1103545 | - | 237 | WP_024130262.1 | DUF1480 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T22402 NC_009792:1098945-1099048 [Citrobacter koseri ATCC BAA-895]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT22402 NC_009792:c1099055-1098910 [Citrobacter koseri ATCC BAA-895]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
