Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 583042..583310 | Replicon | chromosome |
| Accession | NZ_CP086604 | ||
| Organism | Escherichia fergusonii strain EF20JDJ4045 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 583169..583272 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 583042..583310 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN29_RS02775 | 579592..580254 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| LNN29_RS02780 | 580278..580934 | - | 657 | WP_104919666.1 | carbon-nitrogen hydrolase family protein | - |
| LNN29_RS02785 | 581041..581271 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| LNN29_RS02790 | 581410..581784 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| LNN29_RS02795 | 581787..582659 | + | 873 | WP_000928496.1 | copper homeostasis membrane protein CopD | - |
| LNN29_RS02800 | 582671..583012 | + | 342 | WP_104919667.1 | YebY family protein | - |
| - | 583042..583310 | - | 269 | - | - | Antitoxin |
| - | 583169..583272 | + | 104 | - | - | Toxin |
| LNN29_RS02805 | 583406..584062 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| LNN29_RS02810 | 584063..584254 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LNN29_RS02815 | 584359..584595 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LNN29_RS02820 | 584713..586152 | - | 1440 | WP_002432103.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T223978 NZ_CP086604:583169-583272 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT223978 NZ_CP086604:c583310-583042 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
