Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 796718..797550 | Replicon | chromosome |
| Accession | NZ_CP086556 | ||
| Organism | Escherichia coli strain ESY002 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A7ZVJ9 |
| Locus tag | C5N07_RS03870 | Protein ID | WP_000854765.1 |
| Coordinates | 796718..797092 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1NM52 |
| Locus tag | C5N07_RS03875 | Protein ID | WP_001295723.1 |
| Coordinates | 797182..797550 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5N07_RS03835 (791796) | 791796..792395 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| C5N07_RS03840 (792398) | 792398..793375 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| C5N07_RS03845 (793372) | 793372..794550 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| C5N07_RS03850 (794552) | 794552..795088 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| C5N07_RS03855 (795369) | 795369..796211 | - | 843 | WP_022645115.1 | DUF4942 domain-containing protein | - |
| C5N07_RS03860 (796296) | 796296..796490 | - | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| C5N07_RS03865 (796515) | 796515..796718 | - | 204 | WP_001398797.1 | DUF5983 family protein | - |
| C5N07_RS03870 (796718) | 796718..797092 | - | 375 | WP_000854765.1 | TA system toxin CbtA family protein | Toxin |
| C5N07_RS03875 (797182) | 797182..797550 | - | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| C5N07_RS03880 (797713) | 797713..797934 | - | 222 | WP_000692341.1 | DUF987 domain-containing protein | - |
| C5N07_RS03885 (797997) | 797997..798473 | - | 477 | WP_001186774.1 | RadC family protein | - |
| C5N07_RS03890 (798489) | 798489..798968 | - | 480 | WP_057109541.1 | antirestriction protein | - |
| C5N07_RS03895 (799234) | 799234..800052 | - | 819 | WP_001175165.1 | DUF932 domain-containing protein | - |
| C5N07_RS03900 (800142) | 800142..800375 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| C5N07_RS03905 (800381) | 800381..801058 | - | 678 | WP_001097302.1 | hypothetical protein | - |
| C5N07_RS03910 (801206) | 801206..801886 | - | 681 | WP_001282921.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13970.98 Da Isoelectric Point: 7.2909
>T223795 WP_000854765.1 NZ_CP086556:c797092-796718 [Escherichia coli]
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T223795 NZ_CP119319:572557-572910 [Kluyvera intermedia]
GTGTGGACAATTAAGACTACGGATGGATTTGACAATTGGTTTAGCACGCTCTGCGCAACCGACCGGGCCAGTGTGCTGGC
TTCGCTACTCGTGCTGCGGGAAAAGGGGCCGGGATTGCCCAGACCCTATGCTGATACGATAAAAGGTTCCTGCTACAGCA
ATATGAAAGAGCTGCGTGTACAGAGCCAGGGCGATCCGATACGGGTATTTTTCGCTTTCGATCCTTACCGAACCGGCATT
CTGCTTTGTGCTGGTAACAAGGTCGGTAATGAAAAACGTTTTTATAATCAGATGATCGCGGTTGCTGACCGGGAATTTAC
TGATTATCTGAATACGTTAGATGATAAGGAGTAA
GTGTGGACAATTAAGACTACGGATGGATTTGACAATTGGTTTAGCACGCTCTGCGCAACCGACCGGGCCAGTGTGCTGGC
TTCGCTACTCGTGCTGCGGGAAAAGGGGCCGGGATTGCCCAGACCCTATGCTGATACGATAAAAGGTTCCTGCTACAGCA
ATATGAAAGAGCTGCGTGTACAGAGCCAGGGCGATCCGATACGGGTATTTTTCGCTTTCGATCCTTACCGAACCGGCATT
CTGCTTTGTGCTGGTAACAAGGTCGGTAATGAAAAACGTTTTTATAATCAGATGATCGCGGTTGCTGACCGGGAATTTAC
TGATTATCTGAATACGTTAGATGATAAGGAGTAA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13592.40 Da Isoelectric Point: 6.6255
>AT223795 WP_001295723.1 NZ_CP086556:c797550-797182 [Escherichia coli]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT223795 NZ_CP119319:572915-573217 [Kluyvera intermedia]
ATGGGCAGAACGCTCGAACAGCTTCTTGCAGATGAAAAACCGGACGTTGTGGCCGATGCGCAGGCGATGGCGGCGGACAT
TCTGCTCAACATCCATCTTGCCGAACTGCGAGAGAAAGTGCAGAAAACGCAAGTGGAAATGGCCGAGGTGCTGGGAATCC
GTCAACCTACAGTCGCCAGCATGGAAAAGCCTGGACGCGATATGAAACTGTCCACGCTTAAGCGCTACGTTGAAGCGACC
GGTGGAAAACTACGTTTTGATGTTGAACTGCCGGATGGCTCTCACTACGGATTTGTACTGTAA
ATGGGCAGAACGCTCGAACAGCTTCTTGCAGATGAAAAACCGGACGTTGTGGCCGATGCGCAGGCGATGGCGGCGGACAT
TCTGCTCAACATCCATCTTGCCGAACTGCGAGAGAAAGTGCAGAAAACGCAAGTGGAAATGGCCGAGGTGCTGGGAATCC
GTCAACCTACAGTCGCCAGCATGGAAAAGCCTGGACGCGATATGAAACTGTCCACGCTTAAGCGCTACGTTGAAGCGACC
GGTGGAAAACTACGTTTTGATGTTGAACTGCCGGATGGCTCTCACTACGGATTTGTACTGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|