Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1356666..1356834 | Replicon | chromosome |
| Accession | NC_009778 | ||
| Organism | Cronobacter sakazakii ATCC BAA-894 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1356728..1356831 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1356666..1356834 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ESA_RS06415 | 1351816..1353879 | + | 2064 | WP_012124467.1 | oligopeptidase B | - |
| ESA_RS06420 | 1353876..1354538 | - | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| ESA_RS06425 | 1354611..1354841 | - | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| ESA_RS06430 | 1354988..1355362 | + | 375 | WP_007900668.1 | CopC domain-containing protein YobA | - |
| ESA_RS06435 | 1355367..1356236 | + | 870 | WP_012124469.1 | copper homeostasis membrane protein CopD | - |
| ESA_RS06440 | 1356251..1356589 | + | 339 | WP_012124470.1 | YebY family protein | - |
| - | 1356666..1356834 | - | 169 | - | - | Antitoxin |
| - | 1356728..1356831 | + | 104 | - | - | Toxin |
| ESA_RS22900 | 1357058..1357618 | + | 561 | WP_032968251.1 | hypothetical protein | - |
| ESA_RS06450 | 1357572..1357907 | + | 336 | WP_007868609.1 | hypothetical protein | - |
| ESA_RS06455 | 1358703..1359347 | + | 645 | WP_012124478.1 | metallophosphoesterase | - |
| ESA_RS06460 | 1359348..1359539 | - | 192 | WP_004386675.1 | YebW family protein | - |
| ESA_RS06465 | 1359664..1359903 | - | 240 | WP_004386676.1 | YebV family protein | - |
| ESA_RS06470 | 1360016..1361458 | - | 1443 | WP_041460475.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T22362 NC_009778:1356728-1356831 [Cronobacter sakazakii ATCC BAA-894]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT22362 NC_009778:c1356834-1356666 [Cronobacter sakazakii ATCC BAA-894]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
