Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 796312..797144 | Replicon | chromosome |
| Accession | NZ_CP086490 | ||
| Organism | Escherichia coli strain Ec-050-T5-ESBL | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A7ZVJ9 |
| Locus tag | LNN51_RS03870 | Protein ID | WP_000854765.1 |
| Coordinates | 796312..796686 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1NM52 |
| Locus tag | LNN51_RS03875 | Protein ID | WP_001295723.1 |
| Coordinates | 796776..797144 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN51_RS03835 (791390) | 791390..791989 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| LNN51_RS03840 (791992) | 791992..792969 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| LNN51_RS03845 (792966) | 792966..794144 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| LNN51_RS03850 (794146) | 794146..794682 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| LNN51_RS03855 (794963) | 794963..795805 | - | 843 | WP_022645115.1 | DUF4942 domain-containing protein | - |
| LNN51_RS03860 (795890) | 795890..796084 | - | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| LNN51_RS03865 (796109) | 796109..796312 | - | 204 | WP_001398797.1 | DUF5983 family protein | - |
| LNN51_RS03870 (796312) | 796312..796686 | - | 375 | WP_000854765.1 | TA system toxin CbtA family protein | Toxin |
| LNN51_RS03875 (796776) | 796776..797144 | - | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| LNN51_RS03880 (797307) | 797307..797528 | - | 222 | WP_000692341.1 | DUF987 domain-containing protein | - |
| LNN51_RS03885 (797591) | 797591..798067 | - | 477 | WP_001186774.1 | RadC family protein | - |
| LNN51_RS03890 (798083) | 798083..798562 | - | 480 | WP_057109541.1 | antirestriction protein | - |
| LNN51_RS03895 (798828) | 798828..799646 | - | 819 | WP_001175165.1 | DUF932 domain-containing protein | - |
| LNN51_RS03900 (799736) | 799736..799969 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| LNN51_RS03905 (799975) | 799975..800652 | - | 678 | WP_001097302.1 | hypothetical protein | - |
| LNN51_RS03910 (800800) | 800800..801480 | - | 681 | WP_001282921.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13970.98 Da Isoelectric Point: 7.2909
>T223540 WP_000854765.1 NZ_CP086490:c796686-796312 [Escherichia coli]
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T223540 NZ_CP118942:209763-210113 [Aeromonas hydrophila]
ATGTGGACAGTAAAAACGACCGAGCTGTTTGATGCTTGGTTTGATGTGCAAGATGACGCGACGCAGGAGAAAGTCTTGGC
CGGGCTACTCGCCTTGGCACAAGGTGGCCCATCGGTAGGGCGTCCCCTGGTCGATACCATCAAGGGCTCGCGTTTTACGA
ACTTGAAAGAGTTGAGGGTGCAGCATCAGGGGGAGCCGCTACGTGCATTCTTCGCCTTTGATCCGTTGCGACAAGCCATA
GTGCTGTGTGCTGGCAACAAGGGCGGGAACGAGAAGCGATTTTACAAAGAGATGCTGCCGTTGGCTGAGGCGCAGTACGC
TAGGCATCTGGCTGAGTTGGAGGAAAAGTAA
ATGTGGACAGTAAAAACGACCGAGCTGTTTGATGCTTGGTTTGATGTGCAAGATGACGCGACGCAGGAGAAAGTCTTGGC
CGGGCTACTCGCCTTGGCACAAGGTGGCCCATCGGTAGGGCGTCCCCTGGTCGATACCATCAAGGGCTCGCGTTTTACGA
ACTTGAAAGAGTTGAGGGTGCAGCATCAGGGGGAGCCGCTACGTGCATTCTTCGCCTTTGATCCGTTGCGACAAGCCATA
GTGCTGTGTGCTGGCAACAAGGGCGGGAACGAGAAGCGATTTTACAAAGAGATGCTGCCGTTGGCTGAGGCGCAGTACGC
TAGGCATCTGGCTGAGTTGGAGGAAAAGTAA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13592.40 Da Isoelectric Point: 6.6255
>AT223540 WP_001295723.1 NZ_CP086490:c797144-796776 [Escherichia coli]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT223540 NZ_CP118942:210113-210415 [Aeromonas hydrophila]
ATGGGAAGAACACTTGACGATTTGCTGGCCTCCCGTTCAGAAGAGAGTCAGCAGCGCATCCAGGAAATGGCTACCGAGCT
GTTGCTGGAGGTGCGTATACAGGCGCTACGCGAAGAGCTGGAAGTGTCGCAGATCGAGTTGGCTAAGGCACTCGGTGTCA
GTCAGCCTGCCGTCGTGGCGATGGAGCAGCGTGGCAGTGATATCAAGCTCTCCACCATGAAACGCTATGTTGAAGCCATG
GGCGGCAAGCTGCGTGTAGATGTGGAATTGCCAACCGGACGACACATTGGGTTCAACGTCTGA
ATGGGAAGAACACTTGACGATTTGCTGGCCTCCCGTTCAGAAGAGAGTCAGCAGCGCATCCAGGAAATGGCTACCGAGCT
GTTGCTGGAGGTGCGTATACAGGCGCTACGCGAAGAGCTGGAAGTGTCGCAGATCGAGTTGGCTAAGGCACTCGGTGTCA
GTCAGCCTGCCGTCGTGGCGATGGAGCAGCGTGGCAGTGATATCAAGCTCTCCACCATGAAACGCTATGTTGAAGCCATG
GGCGGCAAGCTGCGTGTAGATGTGGAATTGCCAACCGGACGACACATTGGGTTCAACGTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|