Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2639186..2639280 Replicon chromosome
Accession NC_009708
Organism Yersinia pseudotuberculosis IP 31758

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2639187..2639280 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2639186..2639280 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
YPSIP31758_RS12965 2634379..2636457 - 2079 WP_012105287.1 flagellar biosynthesis protein FlhA -
YPSIP31758_RS12970 2636457..2637617 - 1161 WP_012105288.1 flagellar type III secretion system protein FlhB -
YPSIP31758_RS12975 2638149..2638607 + 459 WP_002211098.1 hypothetical protein -
YPSIP31758_RS12980 2638601..2638927 + 327 WP_002211097.1 DUF1493 family protein -
- 2639186..2639280 + 95 - - Antitoxin
- 2639187..2639280 - 94 - - Toxin
YPSIP31758_RS12990 2639450..2639791 - 342 WP_002211095.1 YebY family protein -
YPSIP31758_RS12995 2639888..2640772 - 885 WP_012105289.1 copper homeostasis membrane protein CopD -
YPSIP31758_RS13000 2640775..2641161 - 387 WP_002211093.1 CopC domain-containing protein YobA -
YPSIP31758_RS13005 2641588..2642097 - 510 WP_002211092.1 non-heme ferritin -
YPSIP31758_RS13010 2642498..2642728 + 231 WP_002211091.1 DNA polymerase III subunit theta -
YPSIP31758_RS13015 2642788..2643738 - 951 WP_011192157.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T22335 NC_009708:c2639280-2639187 [Yersinia pseudotuberculosis IP 31758]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT22335 NC_009708:2639186-2639280 [Yersinia pseudotuberculosis IP 31758]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References