Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2073209..2073354 | Replicon | chromosome |
| Accession | NZ_CP086431 | ||
| Organism | Klebsiella pneumoniae strain AE-2247421-T5-ESBL | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2073245..2073347 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2073209..2073354 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN54_RS10215 | 2068339..2070399 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LNN54_RS10220 | 2070403..2071062 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LNN54_RS10225 | 2071141..2071371 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LNN54_RS10230 | 2071484..2071858 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LNN54_RS10235 | 2071862..2072731 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| LNN54_RS10240 | 2072748..2073086 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2073209..2073354 | - | 146 | - | - | Antitoxin |
| - | 2073245..2073347 | + | 103 | - | - | Toxin |
| LNN54_RS10245 | 2073722..2073865 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LNN54_RS10250 | 2073970..2074938 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LNN54_RS10255 | 2075095..2075748 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| LNN54_RS10260 | 2075745..2075936 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LNN54_RS10265 | 2076034..2076273 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LNN54_RS10270 | 2076389..2077822 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T223296 NZ_CP086431:2073245-2073347 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT223296 NZ_CP086431:c2073354-2073209 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
