Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1622095..1622366 | Replicon | chromosome |
| Accession | NZ_CP086391 | ||
| Organism | Escherichia coli strain 1585m1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1622225..1622328 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1622095..1622366 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LM401_RS10015 | 1618650..1619312 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LM401_RS10020 | 1619336..1619992 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LM401_RS10025 | 1620094..1620324 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LM401_RS10030 | 1620463..1620837 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LM401_RS10035 | 1620841..1621713 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| LM401_RS10040 | 1621726..1622067 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1622095..1622366 | - | 272 | - | - | Antitoxin |
| - | 1622225..1622328 | + | 104 | - | - | Toxin |
| LM401_RS10045 | 1622463..1623119 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| LM401_RS10050 | 1623120..1623311 | - | 192 | WP_001338167.1 | YebW family protein | - |
| LM401_RS10055 | 1623416..1623652 | - | 237 | WP_001338166.1 | YebV family protein | - |
| LM401_RS10060 | 1623770..1625209 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T223158 NZ_CP086391:1622225-1622328 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT223158 NZ_CP086391:c1622366-1622095 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
