223110

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 2358832..2360272 Replicon chromosome
Accession NZ_CP086369
Organism Pectobacterium versatile strain A73-S18-O15

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag LLE50_RS10660 Protein ID WP_130621218.1
Coordinates 2358832..2359719 (-) Length 296 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag LLE50_RS10665 Protein ID WP_103862785.1
Coordinates 2359748..2360272 (-) Length 175 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LLE50_RS10640 (LLE50_10635) 2354818..2355639 + 822 WP_103972360.1 M55 family metallopeptidase -
LLE50_RS10645 (LLE50_10640) 2355696..2356643 + 948 WP_039483119.1 isoaspartyl peptidase/L-asparaginase -
LLE50_RS10650 (LLE50_10645) 2356857..2357765 + 909 WP_130621216.1 LysR family transcriptional regulator -
LLE50_RS10655 (LLE50_10650) 2357863..2358726 + 864 WP_130621217.1 YicC/YloC family endoribonuclease -
LLE50_RS10660 (LLE50_10655) 2358832..2359719 - 888 WP_130621218.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
LLE50_RS10665 (LLE50_10660) 2359748..2360272 - 525 WP_103862785.1 hypothetical protein Antitoxin
LLE50_RS10670 (LLE50_10665) 2361338..2361661 + 324 WP_103862786.1 hypothetical protein -
LLE50_RS10675 (LLE50_10670) 2361710..2361931 + 222 WP_010300679.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
LLE50_RS10680 (LLE50_10675) 2361928..2362320 + 393 WP_130621219.1 type II toxin-antitoxin system death-on-curing family toxin -
LLE50_RS10685 (LLE50_10680) 2362660..2363100 + 441 WP_205076542.1 class I SAM-dependent methyltransferase -
LLE50_RS10690 (LLE50_10685) 2363135..2363446 + 312 WP_198673504.1 hypothetical protein -
LLE50_RS10695 (LLE50_10690) 2363722..2364279 + 558 WP_130621220.1 hypothetical protein -
LLE50_RS10700 (LLE50_10695) 2364322..2364867 - 546 WP_181919109.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(39-265)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 296 a.a.        Molecular weight: 33988.86 Da        Isoelectric Point: 6.2540

>T223110 WP_130621218.1 NZ_CP086369:c2359719-2358832 [Pectobacterium versatile]
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFQPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKEANRPDLPRQKTHIDVCAIPSFDIEKRPLINHYNIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGINLSKTLVEKKLTARQKQTEDFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKQIKERTLDNPEYWAYVQGEVHAIASELLNDGTPKNPFNMG

Download         Length: 888 bp

>T223110 NZ_CP118528:2847233-2847535 [Vibrio harveyi]
ATGGCTGAAATAATCTGGACTGAGCCAGCGTTATCTGACCTCAACGATATCGCTGAATACATCGCACTTGAAAATATCGT
AGCTGCAAAGCAGTTAGTGCAAACGATCTTCTCCAAAGTCGAACGTTTACAAACTTTCCCAGAGTCAGGTCGTATTCCAC
CCGATCTAAAACATTTAAGTTATCGTGAAGTTGTCGTTAATCCATGTCGTGTTTTCTATAAACAAGACGGTGACAAAGTG
TTTATTTTGTTTGTTATGCGCGCAGAGAGAGGTTTGCGTAAGTTCTTGTTAAATAAGCAATAA

Antitoxin


Download         Length: 175 a.a.        Molecular weight: 19325.45 Da        Isoelectric Point: 9.0504

>AT223110 WP_103862785.1 NZ_CP086369:c2360272-2359748 [Pectobacterium versatile]
MAKSDELLSALAKSVNAGGGIHSVAELAFMQGVPCDSAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES

Download         Length: 525 bp

>AT223110 NZ_CP118528:2846988-2847245 [Vibrio harveyi]
ATGAAAGTAGAACTAGTTACATCACTCAAACGTCAAGCAACTAAGATTCTCGCCGATCTCCACGACACCAAAGAACCAGT
GTTAATTACTGAGCATGGTAAGCCATCCGCGTATCTCGTTGATGTTGATGACTACGAGTTTATGCAAAATCGTTTAGCTA
TTCTTGAGGGTATTGCACGAGGTGAGCGTGCACTAGCTGACGGTAAAGTGGTAAGTCATGATGAAGCCAAGGGCAAAATG
TCAAAATGGCTGAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References