Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 796706..797538 | Replicon | chromosome |
| Accession | NZ_CP086340 | ||
| Organism | Escherichia coli strain ESY003 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A7ZVJ9 |
| Locus tag | C5N08_RS03870 | Protein ID | WP_000854765.1 |
| Coordinates | 796706..797080 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1NM52 |
| Locus tag | C5N08_RS03875 | Protein ID | WP_001295723.1 |
| Coordinates | 797170..797538 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5N08_RS03835 (791784) | 791784..792383 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| C5N08_RS03840 (792386) | 792386..793363 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| C5N08_RS03845 (793360) | 793360..794538 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| C5N08_RS03850 (794540) | 794540..795076 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| C5N08_RS03855 (795357) | 795357..796199 | - | 843 | WP_022645115.1 | DUF4942 domain-containing protein | - |
| C5N08_RS03860 (796284) | 796284..796478 | - | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| C5N08_RS03865 (796503) | 796503..796706 | - | 204 | WP_001398797.1 | DUF5983 family protein | - |
| C5N08_RS03870 (796706) | 796706..797080 | - | 375 | WP_000854765.1 | TA system toxin CbtA family protein | Toxin |
| C5N08_RS03875 (797170) | 797170..797538 | - | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| C5N08_RS03880 (797701) | 797701..797922 | - | 222 | WP_000692341.1 | DUF987 domain-containing protein | - |
| C5N08_RS03885 (797985) | 797985..798461 | - | 477 | WP_001186774.1 | RadC family protein | - |
| C5N08_RS03890 (798477) | 798477..798956 | - | 480 | WP_057109541.1 | antirestriction protein | - |
| C5N08_RS03895 (799222) | 799222..800040 | - | 819 | WP_001175165.1 | DUF932 domain-containing protein | - |
| C5N08_RS03900 (800130) | 800130..800363 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| C5N08_RS03905 (800369) | 800369..801046 | - | 678 | WP_001097302.1 | hypothetical protein | - |
| C5N08_RS03910 (801194) | 801194..801874 | - | 681 | WP_001282921.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13970.98 Da Isoelectric Point: 7.2909
>T223056 WP_000854765.1 NZ_CP086340:c797080-796706 [Escherichia coli]
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T223056 NZ_CP118383:c3765511-3765125 [Enterobacter hormaechei]
ATGCAAACGAAATTACCCTTCATGCGGGCGGCATCGTCACGTCCGTCTCCCGTTGATGTCTGGCAGACTCTACTGACCTG
CCTGCTGGAACACCACTATGGTCTCACGCTTAACGATACGCCGTTCAGTGATGAACTGGTGATTCAGCAACATATCGACG
CGGGTATCTCGCTGGCCGATGCCCTGAATTTTATTGTTGAGAAGTATGAACTGGTCCGCACTGACCGGCCAGGCTTCAGC
ATCAGGGAGCAGTCTCCGTTTATTACGGCCTTTGATATTCTCCGGGCCAGAAAGGCTACAGGGCTGATGAACCGTGGCAC
GTATAAAGAGGTGACGGCTATTACCAGAGGACAACATCCGCAGGCCAGCACTTCAGGCAAGCGATGA
ATGCAAACGAAATTACCCTTCATGCGGGCGGCATCGTCACGTCCGTCTCCCGTTGATGTCTGGCAGACTCTACTGACCTG
CCTGCTGGAACACCACTATGGTCTCACGCTTAACGATACGCCGTTCAGTGATGAACTGGTGATTCAGCAACATATCGACG
CGGGTATCTCGCTGGCCGATGCCCTGAATTTTATTGTTGAGAAGTATGAACTGGTCCGCACTGACCGGCCAGGCTTCAGC
ATCAGGGAGCAGTCTCCGTTTATTACGGCCTTTGATATTCTCCGGGCCAGAAAGGCTACAGGGCTGATGAACCGTGGCAC
GTATAAAGAGGTGACGGCTATTACCAGAGGACAACATCCGCAGGCCAGCACTTCAGGCAAGCGATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13592.40 Da Isoelectric Point: 6.6255
>AT223056 WP_001295723.1 NZ_CP086340:c797538-797170 [Escherichia coli]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT223056 NZ_CP118383:c3765924-3765565 [Enterobacter hormaechei]
TTGTCGAAGAAAACCACACTAACAACACATGATATCAGCGAGCCCTGGTGGGGGCTCAGACGCAGTATCTCCCCGTGTTT
TGGTGCCCGTCTGGTCCAGATGGGAAACCGCCTGCACTACCTGGCTGACCGCGCGAACTTTGATGGTCAGTTCTGCGATG
CAGATTTGCGCCATCTTGACCAGGCTTTCCCGGTATTGATGAAACAGCTGGAGTTAATGCTCACCAGCGGTGAACTGAAT
CCCCGCCACCAGCATGGCGTCACGCTGTATGCAAAAGGCCTGACCTGCGAGGCCGATACGCTCGGTTCGCATGGCTACGT
TTATATCGCGATTTATCCCGCTCCCGTCACCACAGAATAA
TTGTCGAAGAAAACCACACTAACAACACATGATATCAGCGAGCCCTGGTGGGGGCTCAGACGCAGTATCTCCCCGTGTTT
TGGTGCCCGTCTGGTCCAGATGGGAAACCGCCTGCACTACCTGGCTGACCGCGCGAACTTTGATGGTCAGTTCTGCGATG
CAGATTTGCGCCATCTTGACCAGGCTTTCCCGGTATTGATGAAACAGCTGGAGTTAATGCTCACCAGCGGTGAACTGAAT
CCCCGCCACCAGCATGGCGTCACGCTGTATGCAAAAGGCCTGACCTGCGAGGCCGATACGCTCGGTTCGCATGGCTACGT
TTATATCGCGATTTATCCCGCTCCCGTCACCACAGAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|