Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2527545..2527816 | Replicon | chromosome |
| Accession | NZ_CP086338 | ||
| Organism | Escherichia coli strain EJN001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2527583..2527686 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2527545..2527816 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5N09_RS12180 | 2524702..2526141 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C5N09_RS12185 | 2526259..2526495 | + | 237 | WP_001295499.1 | YebV family protein | - |
| C5N09_RS12190 | 2526600..2526791 | + | 192 | WP_000457842.1 | YebW family protein | - |
| C5N09_RS12195 | 2526792..2527448 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2527545..2527816 | + | 272 | - | - | Antitoxin |
| - | 2527583..2527686 | - | 104 | - | - | Toxin |
| C5N09_RS12200 | 2527844..2528185 | - | 342 | WP_000976476.1 | YebY family protein | - |
| C5N09_RS12205 | 2528198..2529070 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| C5N09_RS12210 | 2529074..2529448 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C5N09_RS12215 | 2529587..2529817 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C5N09_RS12220 | 2529919..2530575 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| C5N09_RS12225 | 2530599..2531261 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T223037 NZ_CP086338:c2527686-2527583 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT223037 NZ_CP086338:2527545-2527816 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
