Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2200527..2200670 | Replicon | chromosome |
| Accession | NZ_CP086287 | ||
| Organism | Citrobacter freundii strain DY2010 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2200562..2200665 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2200527..2200670 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH92_RS10600 | 2196974..2197636 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| LMH92_RS10605 | 2197660..2198316 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| LMH92_RS10610 | 2198423..2198653 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| LMH92_RS10615 | 2198797..2199171 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| LMH92_RS10620 | 2199175..2200047 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| LMH92_RS10625 | 2200068..2200406 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2200527..2200670 | - | 144 | - | - | Antitoxin |
| - | 2200562..2200665 | + | 104 | - | - | Toxin |
| LMH92_RS10630 | 2200819..2201460 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| LMH92_RS10635 | 2201461..2201652 | - | 192 | WP_003034941.1 | YebW family protein | - |
| LMH92_RS10640 | 2201755..2201991 | - | 237 | WP_029139506.1 | YebV family protein | - |
| LMH92_RS10645 | 2202092..2203480 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T222905 NZ_CP086287:2200562-2200665 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT222905 NZ_CP086287:c2200670-2200527 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
