Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1869207..1869352 | Replicon | chromosome |
| Accession | NZ_CP086285 | ||
| Organism | Klebsiella pneumoniae strain Kp1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1869243..1869345 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1869207..1869352 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL004_RS09140 | 1864337..1866397 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LL004_RS09145 | 1866401..1867060 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| LL004_RS09150 | 1867139..1867369 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LL004_RS09155 | 1867482..1867856 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LL004_RS09160 | 1867860..1868729 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LL004_RS09165 | 1868746..1869084 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1869207..1869352 | - | 146 | - | - | Antitoxin |
| - | 1869243..1869345 | + | 103 | - | - | Toxin |
| LL004_RS09170 | 1869720..1869863 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LL004_RS09175 | 1869968..1870936 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LL004_RS09180 | 1871093..1871746 | + | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| LL004_RS09185 | 1871743..1871934 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LL004_RS09190 | 1872032..1872271 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LL004_RS09195 | 1872387..1873820 | - | 1434 | WP_117045278.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T222886 NZ_CP086285:1869243-1869345 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT222886 NZ_CP086285:c1869352-1869207 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
